C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member C/D, Th1l
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109075 Nelfcd-001 ENSMUSG00000016253 10090 + 2:174415804-174427502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109075 19.962±0.90 24.891±1.29 14.438±2.36 25.969±6.98 15.582±3.31 17.714±0.47 13.181±1.04 14.707±0.58 23.735±11.68 14.664±0.75 10.178±0.52 19.867±2.67 30.586±9.30 8.790±2.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U2 CIL_0002U2_0002 CGP 2:174415804-174439039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0016020 IEA membrane
GO:0032021 ISS NELF complex
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344018 NELFCD-201 protein_coding Homo_sapiens 0 2019
ENST00000460601 NELFCD-010 nonsense_mediated_decay Homo_sapiens 0 2032
ENST00000464363 NELFCD-006 retained_intron Homo_sapiens 0 207
ENST00000471621 NELFCD-007 retained_intron Homo_sapiens 0 355
ENST00000474543 NELFCD-002 retained_intron Homo_sapiens 0 1279
ENST00000477741 NELFCD-008 retained_intron Homo_sapiens 0 835
ENST00000478389 NELFCD-011 retained_intron Homo_sapiens 0 322
ENST00000479207 NELFCD-004 processed_transcript Homo_sapiens 0 636
ENST00000482747 NELFCD-009 retained_intron Homo_sapiens 0 590
ENST00000492016 NELFCD-012 retained_intron Homo_sapiens 0 496
ENST00000497935 NELFCD-013 processed_transcript Homo_sapiens 0 771
ENST00000602795 NELFCD-003 protein_coding Homo_sapiens 0 2032

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