C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATM interactor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109099 Atmin-001 ENSMUSG00000047388 10090 + 8:116943393-116960445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109099 7.394±1.57 6.848±0.91 5.313±0.07 8.622±0.73 8.041±1.31 8.243±0.96 4.043±0.36 7.627±0.59 2.069±0.37 8.377±0.26 6.464±0.32 10.969±2.97 11.713±4.14 14.756±6.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QV CIL_0001QV_0002 CGP 8:116921740-116960445
CIL_0001QN CIL_0001QN_0002 CGP 8:116943393-116978943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045502 IEA dynein binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299575 ATMIN-001 protein_coding Homo_sapiens 0 1988
ENST00000445995 RP11-173G21.1-001 processed_pseudogene Homo_sapiens 0 1718
ENST00000539819 ATMIN-002 processed_transcript Homo_sapiens 0 1304
ENST00000562969 ATMIN-006 retained_intron Homo_sapiens 0 339
ENST00000564241 ATMIN-003 protein_coding Homo_sapiens 0 1694
ENST00000566488 ATMIN-004 protein_coding Homo_sapiens 0 1698

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