C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216133 CBX7-001 ENSG00000100307 9606 - 22:39130772-39152650 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyOvaryPlacentaENST00000216133
Transcript ID Brain Breast Kidney Ovary Placenta
ENST00000216133 25.627±0.00 1.683±0.70 1.187±0.00 3.261±2.04 0.676±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NO CIL_0005NO_0001 CGP 22:39120167-39244751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000792 IEA heterochromatin
GO:0003682 IEA chromatin binding
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 IDA PcG protein complex
GO:0035064 IEA methylated histone binding
GO:0035102 ISS PRC1 complex
GO:0048733 IEA sebaceous gland development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089293 Cbx7-002 protein_coding Mus_musculus 0 1136
ENSMUST00000176639 Cbx7-007 retained_intron Mus_musculus 0 604
ENSMUST00000109616 Cbx7-001 protein_coding Mus_musculus 0 529
ENSMUST00000109615 Cbx7-004 protein_coding Mus_musculus 0 411
ENSMUST00000177044 Cbx7-008 protein_coding Mus_musculus 0 350
ENSMUST00000132821 Cbx7-006 protein_coding Mus_musculus 0 263
ENSMUST00000128931 Cbx7-005 protein_coding Mus_musculus 0 263
ENSMUST00000146719 Cbx7-003 protein_coding Mus_musculus 0 263
ENSMUST00000177098 Apobec3-007 nonsense_mediated_decay Mus_musculus 4e-27 128
ENSMUST00000177061 Cbx7-009 retained_intron Mus_musculus 0.00000001 68

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