C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaphilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109877 Snph-005 ENSMUSG00000027457 10090 - 2:151591725-151632593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109877 0.297±0.25 1.243±0.20 0.206±0.00 2.982±1.41 0.111±0.07 1.889±0.42 0.036±0.03 0.050±0.02 0.014±0.01 0.164±0.05 0.205±0.04 2.000±0.64 0.060±0.02 0.036±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005881 ISS cytoplasmic microtubule
GO:0016021 IEA integral component of membrane
GO:0017075 IEA syntaxin-1 binding
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381867 SNPH-001 protein_coding Homo_sapiens 0 1530
ENST00000381873 SNPH-002 protein_coding Homo_sapiens 0 1530
ENST00000402452 RAD21L1-001 protein_coding Homo_sapiens 0 224
ENST00000614659 SNPH-201 protein_coding Homo_sapiens 0 1530

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