C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaphilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381867 SNPH-001 ENSG00000101298 9606 + 20:1266355-1309328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLungENST00000381867
Transcript ID Brain Heart Lung
ENST00000381867 0.642±0.00 0.473±0.00 0.259±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000011 CIL_000011_0002 CGP 20:1226056-1309328
CIL_000012 CIL_000012_0002 CGP 20:1266316-1329239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005881 IDA cytoplasmic microtubule
GO:0007269 NAS neurotransmitter secretion
GO:0016021 IEA integral component of membrane
GO:0016081 NAS synaptic vesicle docking involved in exocytosis
GO:0017075 NAS syntaxin-1 binding
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094456 Snph-002 protein_coding Mus_musculus 0 1777
ENSMUST00000109875 Snph-006 protein_coding Mus_musculus 0 1687
ENSMUST00000028951 Snph-001 protein_coding Mus_musculus 0 1687
ENSMUST00000109877 Snph-005 protein_coding Mus_musculus 0 1530
ENSMUST00000141692 Snph-003 processed_transcript Mus_musculus 0 339
ENSMUST00000148755 Snph-004 protein_coding Mus_musculus 0 230
ENSMUST00000133378 Snph-008 retained_intron Mus_musculus 1e-38 167
ENSMUST00000143367 Snph-009 processed_transcript Mus_musculus 4e-38 165
ENSMUST00000146172 Snph-010 protein_coding Mus_musculus 4e-38 165
ENSMUST00000145434 Snph-011 retained_intron Mus_musculus 4e-38 165
ENSMUST00000137936 Snph-007 protein_coding Mus_musculus 2e-31 143

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