C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapse differentiation inducing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109935 Syndig1-001 ENSMUSG00000074736 10090 + 2:149830788-150004392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000109935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109935 3.312±2.56 0.408±0.20 13.919±1.01 2.692±0.26 0.083±0.01 1.869±0.82 0.063±0.02 0.073±0.03 0.113±0.05 0.038±0.00 5.352±2.25 0.340±0.59 0.162±0.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 IDA integral component of plasma membrane
GO:0006886 IDA intracellular protein transport
GO:0009607 IEA response to biotic stimulus
GO:0014069 IDA postsynaptic density
GO:0030054 IEA cell junction
GO:0031901 IDA early endosome membrane
GO:0035254 IPI glutamate receptor binding
GO:0042803 IDA protein homodimerization activity
GO:0043197 ISS dendritic spine
GO:0043198 ISS dendritic shaft
GO:0044297 ISS cell body
GO:0045211 IEA postsynaptic membrane
GO:0051965 IDA positive regulation of synapse assembly
GO:0060076 ISS excitatory synapse
GO:0097091 ISS synaptic vesicle clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331628 SYNDIG1L-201 protein_coding Homo_sapiens 2e-38 165
ENST00000376862 SYNDIG1-001 protein_coding Homo_sapiens 0 1199
ENST00000482637 SYNDIG1-002 processed_transcript Homo_sapiens 7e-31 137
ENST00000554823 SYNDIG1L-001 protein_coding Homo_sapiens 2e-38 165

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