C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109937 Clmn-202 ENSMUSG00000021097 10090 - 12:104763114-104865076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109937 0.841±0.43 0.459±0.09 0.457±0.00 0.100±0.00 1.259±0.58 3.067±0.82 0.171±0.10 1.495±0.12 0.771±0.86 0.625±0.07 0.285±0.16 1.138±0.59 0.213±0.11 7.403±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0003QP CIL_0003QP_0002 CGP 12:104687742-104865076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IDA cytoplasm
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0031175 IMP neuron projection development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298912 CLMN-001 protein_coding Homo_sapiens 0 1286
ENST00000555336 CLMN-003 protein_coding Homo_sapiens 0 614
ENST00000555615 CLMN-010 protein_coding Homo_sapiens 0 520

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