C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109968 Pax1-001 ENSMUSG00000037034 10090 + 2:147364994-147375053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109968
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109968 0.015±0.00 0.012±0.00 0.013±0.00 0.248±0.04 0.294±0.12 0.030±0.01 0.038±0.02 0.015±0.01 0.039±0.02 0.013±0.00 0.130±0.07 0.064±0.05 3.147±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VN CIL_0008VN_0002 VISTA 2:146880290-147481581
CIL_0001U0 CIL_0001U0_0002 CGP 2:147177546-147393295
CIL_0002XI CIL_0002XI_0002 CGP 2:147361925-148046969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001756 IMP somitogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0008283 IMP cell proliferation
GO:0009887 TAS organ morphogenesis
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IGI thymus development
GO:0060017 IGI parathyroid gland development
GO:0060349 IMP bone morphogenesis
GO:0061056 IEP sclerotome development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398485 PAX1-001 protein_coding Homo_sapiens 0 1480
ENST00000444366 PAX1-002 protein_coding Homo_sapiens 0 1182
ENST00000460221 PAX1-003 processed_transcript Homo_sapiens 0 568
ENST00000613128 PAX1-201 protein_coding Homo_sapiens 0 1495

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