C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037034 Pax1 10090 + 2:147361925-147393295 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109968 Pax1-001 147364994-147375053 protein_coding
  ENSMUST00000126068 Pax1-002 147361925-147367878 protein_coding
  ENSMUST00000156584 Pax1-003 147368282-147393295 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109968ENSMUST00000126068ENSMUST00000156584
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109968 0.015±0.00 0.012±0.00 0.013±0.00 0.248±0.04 0.294±0.12 0.030±0.01 0.038±0.02 0.015±0.01 0.039±0.02 0.013±0.00 0.130±0.07 0.064±0.05 3.147±1.63
ENSMUST00000126068 N/A N/A N/A N/A N/A 0.005±0.00 0.056±0.00 N/A 0.021±0.00 N/A 0.130±0.05 N/A 0.306±0.00
ENSMUST00000156584 N/A N/A N/A N/A 0.121±0.00 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VN CIL_0008VN_0002 VISTA 2:146880290-147481581
CIL_0001U0 CIL_0001U0_0002 CGP 2:147177546-147393295
CIL_0002XI CIL_0002XI_0002 CGP 2:147361925-148046969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001756 IMP somitogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0008283 IMP cell proliferation
GO:0009887 TAS organ morphogenesis
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IGI thymus development
GO:0060017 IGI parathyroid gland development
GO:0060349 IMP bone morphogenesis
GO:0061056 IEP sclerotome development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008203 pax1a paired box 1a protein_coding Danio_rerio
ENSDARG00000073814 pax1b paired box 1b protein_coding Danio_rerio
ENSG00000125813 PAX1 paired box 1 protein_coding Homo_sapiens

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