C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1205 VISTA 9606 20:21207913-21809383
GeneTranscriptPositionBiotype
ENSG00000088930 (XRN2)
5'-3' exoribonuclease 2 		ENST00000377191 (XRN2-001) 21303304-21389827 protein_coding
ENSG00000125813 (PAX1)
paired box 1 		ENST00000398485 (PAX1-001) 21705659-21715982 protein_coding
ENST00000444366 (PAX1-002) 21706223-21715109 protein_coding
ENST00000460221 (PAX1-003) 21705687-21709424 processed_transcript
ENST00000485038 (PAX1-004) 21708270-21709277 retained_intron
ENST00000613128 (PAX1-201) 21705659-21718486 protein_coding
ENSG00000125816 (NKX2-4)
NK2 homeobox 4 		ENST00000351817 (NKX2-4-001) 21395367-21398028 protein_coding
ENSG00000125820 (NKX2-2)
NK2 homeobox 2 		ENST00000377142 (NKX2-2-001) 21511010-21514026 protein_coding
ENSG00000223128 (RN7SKP140)
RNA, 7SK small nuclear pseudogene 140 		ENST00000411196 (RN7SKP140-201) 21424758-21425041 misc_RNA
ENSG00000225280 (RP11-227D2.3)
 ENST00000419666 (RP11-227D2.3-001) 21398893-21400391 antisense
ENST00000552439 (RP11-227D2.3-002) 21397818-21399366 antisense
ENSG00000226405 (RP5-984P4.1)
 ENST00000421090 (RP5-984P4.1-001) 21488244-21488625 processed_pseudogene
ENSG00000227693 (GSTM3P1)
glutathione S-transferase mu 3 pseudogene 1 		ENST00000447621 (GSTM3P1-001) 21501395-21501968 processed_pseudogene
ENSG00000233015 (SLC25A6P1)
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1 		ENST00000412123 (SLC25A6P1-001) 21742303-21743077 processed_pseudogene
ENSG00000258197 (NKX2-2-AS1)
NKX2-2 antisense RNA 1 		ENST00000549659 (NKX2-2-AS1-001) 21511447-21512309 antisense
ENSG00000278041 (RP5-984P4.6)
 ENST00000622757 (RP5-984P4.6-001) 21499261-21502934 lincRNA
ENSG00000279082 (RP1-167O22.1)
 ENST00000622928 (RP1-167O22.1-004) 21570138-21578028 lincRNA
ENST00000623256 (RP1-167O22.1-002) 21569976-21616325 lincRNA
ENST00000624367 (RP1-167O22.1-003) 21612548-21615935 lincRNA
ENST00000624385 (RP1-167O22.1-001) 21612644-21619674 lincRNA
ENSG00000280350 (RP5-1065O2.4)
 ENST00000624692 (RP5-1065O2.4-001) 21610787-21703585 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008VN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1205 VISTA 10090 2:146880290-147481581
GeneTranscriptPositionBiotype
ENSMUSG00000027433 (Xrn2)
5'-3' exoribonuclease 2 		ENSMUST00000028921 (Xrn2-001) 147012996-147078000 protein_coding
ENSMUST00000136136 (Xrn2-003) 147042546-147047822 retained_intron
ENSMUST00000137358 (Xrn2-004) 147061440-147068900 retained_intron
ENSMUST00000147057 (Xrn2-002) 147029552-147038287 retained_intron
ENSMUSG00000027434 (Nkx2-2)
NK2 homeobox 2 		ENSMUST00000067075 (Nkx2-2-002) 147183083-147186404 protein_coding
ENSMUST00000109969 (Nkx2-2-003) 147186305-147194243 processed_transcript
ENSMUST00000109970 (Nkx2-2-001) 147177546-147186101 protein_coding
ENSMUST00000172627 (Nkx2-2-004) 147186382-147194242 processed_transcript
ENSMUSG00000037034 (Pax1)
paired box 1 		ENSMUST00000109968 (Pax1-001) 147364994-147375053 protein_coding
ENSMUST00000126068 (Pax1-002) 147361925-147367878 protein_coding
ENSMUST00000156584 (Pax1-003) 147368282-147393295 retained_intron
ENSMUSG00000053545 (6430503K07Rik)
RIKEN cDNA 6430503K07 gene 		ENSMUST00000144411 (6430503K07Rik-001) 147187424-147188407 antisense
ENSMUSG00000054160 (Nkx2-4)
NK2 homeobox 4 		ENSMUST00000067020 (Nkx2-4-001) 147083316-147085445 protein_coding
ENSMUSG00000074749 (Kiz)
kizuna centrosomal protein 		ENSMUST00000099278 (Kiz-001) 146855864-146970097 protein_coding
ENSMUST00000135595 (Kiz-003) 146952883-146970092 retained_intron
ENSMUST00000156232 (Kiz-002) 146855909-146889295 protein_coding
ENSMUSG00000081971 (Gm14115)
predicted gene 14115 		ENSMUST00000119242 (Gm14115-001) 147280603-147281084 processed_pseudogene
ENSMUSG00000082158 (Gm14116)
predicted gene 14116 		ENSMUST00000117733 (Gm14116-001) 147146408-147147212 processed_pseudogene
ENSMUSG00000084371 (Gm14113)
predicted gene 14113 		ENSMUST00000121399 (Gm14113-001) 147289755-147290730 processed_pseudogene
ENSMUSG00000084774 (Gm14110)
predicted gene 14110 		ENSMUST00000127688 (Gm14110-001) 147323562-147325087 lincRNA
ENSMUSG00000086509 (Nkx2-2os)
NK2 homeobox 2, opposite strand 		ENSMUST00000136998 (Nkx2-2os-001) 147184083-147331681 antisense
ENSMUSG00000098763 (Nkx2-2os)
NK2 homeobox 2, opposite strand 		ENSMUST00000184407 (Nkx2-2os-201) 147307181-147307638 misc_RNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088930 ENST00000377191 17.612±0.00 15.565±0.00 1.532±0.00 3.453±1.28 10.045±1.85 8.251±3.12 6.860±3.72 11.647±4.07 6.414±0.81 7.453±4.14 8.171±7.57 14.247±6.28 16.650±3.03 21.002±0.33
ENSG00000125813 ENST00000398485 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.125±0.00 0.289±0.00 0.022±0.00 0.017±0.00 0.058±0.00
ENST00000444366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 0.065±0.00 0.081±0.00
ENST00000460221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000485038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 0.025±0.00
ENSG00000125816 ENST00000351817 N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.87
ENSG00000125820 ENST00000377142 0.045±0.00 0.011±0.00 N/A 1.116±0.64 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSG00000223128 ENST00000411196 N/A N/A N/A 1.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225280 ENST00000419666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000552439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226405 ENST00000421090 N/A N/A N/A 0.104±0.00 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227693 ENST00000447621 N/A N/A N/A 0.494±0.24 N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A 0.441±0.23
ENSG00000233015 ENST00000412123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 0.046±0.00
ENSG00000258197 ENST00000549659 0.081±0.00 N/A N/A 2.496±1.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.06
ENSG00000278041 ENST00000622757 0.004±0.00 0.024±0.00 N/A 0.491±0.25 0.066±0.05 0.021±0.00 N/A 0.020±0.00 N/A N/A N/A 0.006±0.00 0.024±0.00 0.232±0.07
ENSG00000279082 ENST00000622928 N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A N/A N/A
ENST00000623256 N/A N/A N/A 0.117±0.03 N/A N/A N/A N/A 0.123±0.00 N/A N/A 0.020±0.00 N/A N/A
ENST00000624367 N/A 0.110±0.00 N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624385 N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A
ENSG00000280350 ENST00000624692 0.012±0.00 0.194±0.00 N/A 0.124±0.00 0.056±0.04 N/A N/A N/A 0.067±0.00 N/A 0.121±0.00 0.025±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027433 ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87
ENSMUST00000136136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137358 N/A 3.904±0.29 N/A N/A N/A 8.000±1.18 N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.492±0.00 43.586±0.00 50.204±0.00
ENSMUSG00000027434 ENSMUST00000067075 N/A N/A N/A 1.254±0.57 N/A 0.212±0.09 N/A N/A 0.013±0.01 0.013±0.00 N/A N/A 0.006±0.00 0.014±0.00
ENSMUST00000109969 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENSMUST00000109970 N/A N/A N/A 1.244±0.47 N/A 0.801±0.26 N/A N/A N/A N/A 0.062±0.00 N/A 0.075±0.03 N/A
ENSMUST00000172627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037034 ENSMUST00000109968 0.015±0.00 0.012±0.00 0.013±0.00 0.248±0.04 0.294±0.12 N/A 0.030±0.01 0.038±0.02 0.015±0.01 0.039±0.02 0.013±0.00 0.130±0.07 0.064±0.05 3.147±1.63
ENSMUST00000126068 N/A N/A N/A N/A N/A N/A 0.005±0.00 0.056±0.00 N/A 0.021±0.00 N/A 0.130±0.05 N/A 0.306±0.00
ENSMUST00000156584 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000053545 ENSMUST00000144411 N/A N/A N/A 0.315±0.00 N/A 0.218±0.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054160 ENSMUST00000067020 0.031±0.00 N/A 0.013±0.00 0.728±0.52 0.014±0.00 N/A N/A N/A 0.004±0.00 0.018±0.01 N/A 0.027±0.00 0.030±0.01 0.765±0.61
ENSMUSG00000074749 ENSMUST00000099278 2.718±0.50 1.273±0.57 8.198±0.69 5.120±1.26 3.949±0.74 2.072±0.61 8.538±0.76 4.812±0.78 3.344±0.90 5.166±0.57 7.943±0.62 5.651±5.51 3.408±1.34 60.870±18.49
ENSMUST00000135595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156232 N/A 1.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081971 ENSMUST00000119242 N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.00 0.151±0.06 0.098±0.00 N/A
ENSMUSG00000082158 ENSMUST00000117733 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
ENSMUSG00000084371 ENSMUST00000121399 N/A N/A N/A 0.042±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00
ENSMUSG00000084774 ENSMUST00000127688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.02
ENSMUSG00000086509 ENSMUST00000136998 N/A N/A N/A 0.164±0.06 N/A 0.136±0.04 N/A 0.011±0.00 0.002±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.010±0.01
ENSMUSG00000098763 ENSMUST00000184407 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A 0.355±0.00 N/A N/A N/A

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