C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110725 Arhgap5-201 ENSMUSG00000035133 10090 + 12:52516077-52567852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110725 0.925±0.23 1.446±0.34 4.760±0.00 5.764±0.59 1.818±0.85 2.982±0.03 1.535±0.60 1.421±0.00 1.664±1.19 2.139±0.00 1.508±0.80 3.688±2.49 4.881±2.65 3.789±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RC CIL_0005RC_0003 CGP 12:52097737-52567852
CIL_0000H7 CIL_0000H7_0002 CGP 12:52516077-53151015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008361 IMP regulation of cell size
GO:0030335 IMP positive regulation of cell migration
GO:0030879 IEA mammary gland development
GO:0042169 IEA SH2 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216743 ARHGAP5-005 retained_intron Homo_sapiens 0 1029
ENST00000345122 ARHGAP5-201 protein_coding Homo_sapiens 0 7450
ENST00000396582 ARHGAP5-003 protein_coding Homo_sapiens 0 1461
ENST00000407916 RP4-791C19.1-001 processed_pseudogene Homo_sapiens 0 5939
ENST00000432921 ARHGAP5-202 protein_coding Homo_sapiens 0 7001
ENST00000433497 ARHGAP5-004 protein_coding Homo_sapiens 0 1701
ENST00000539826 ARHGAP5-001 protein_coding Homo_sapiens 0 7020
ENST00000554090 ARHGAP5-008 protein_coding Homo_sapiens 0 704
ENST00000555814 ARHGAP5-006 protein_coding Homo_sapiens 0 348
ENST00000556191 ARHGAP5-007 protein_coding Homo_sapiens 0 846
ENST00000556611 ARHGAP5-002 protein_coding Homo_sapiens 0 6924
ENST00000557643 ARHGAP5-009 nonsense_mediated_decay Homo_sapiens 0 749

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