C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Williams Beuren syndrome chromosome region 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111205 Wbscr22-012 ENSMUSG00000005378 10090 - 5:135052959-135064078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000111205
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000111205 9.564±0.00 8.998±1.04 14.031±1.35 19.629±9.10 3.254±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000344 CIL_000344_0002 CGP 5:135023482-135064959

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265758 WBSCR22-001 protein_coding Homo_sapiens 0 564
ENST00000421744 WBSCR22-003 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000423497 WBSCR22-007 protein_coding Homo_sapiens 0 564
ENST00000428163 WBSCR22-013 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000430270 WBSCR22-006 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000430446 WBSCR22-016 nonsense_mediated_decay Homo_sapiens 6.02558e-44 182
ENST00000432522 WBSCR22-002 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000436944 WBSCR22-004 nonsense_mediated_decay Homo_sapiens 2.00386e-43 182
ENST00000441822 WBSCR22-012 protein_coding Homo_sapiens 0 379
ENST00000442099 WBSCR22-017 protein_coding Homo_sapiens 0 261
ENST00000453316 WBSCR22-018 protein_coding Homo_sapiens 6e-37 158
ENST00000463307 WBSCR22-005 retained_intron Homo_sapiens 0 455
ENST00000471215 WBSCR22-008 retained_intron Homo_sapiens 5e-36 158
ENST00000478670 WBSCR22-010 retained_intron Homo_sapiens 0 219
ENST00000487006 WBSCR22-014 retained_intron Homo_sapiens 0 302
ENST00000496153 WBSCR22-011 retained_intron Homo_sapiens 0 261

Loading