C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111240 Alkbh3-001 ENSMUSG00000040174 10090 - 2:93980550-94010807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverPlacentaTestisENSMUST00000111240
Transcript ID Heart Kidney Liver Placenta Testis
ENSMUST00000111240 4.212±0.00 4.365±1.19 2.748±0.40 3.346±0.00 7.989±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0051747 IDA cytosine C-5 DNA demethylase activity
GO:0055114 IDA:IEA oxidation-reduction process
GO:0080111 IDA DNA demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302708 ALKBH3-001 protein_coding Homo_sapiens 0 883
ENST00000529366 ALKBH3-010 protein_coding Homo_sapiens 0 645
ENST00000530754 ALKBH3-005 retained_intron Homo_sapiens 0 582
ENST00000530803 ALKBH3-002 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000532410 ALKBH3-011 processed_transcript Homo_sapiens 0 250
ENST00000532962 ALKBH3-003 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000533200 ALKBH3-009 processed_transcript Homo_sapiens 0 307
ENST00000534171 ALKBH3-006 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187

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