C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111427 POU2F1-201 ENSMUSG00000099515 10090 - 1:165865154-165934948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111427
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111427 0.933±0.36 1.350±0.32 2.003±1.51 1.944±0.53 1.411±0.48 0.266±0.04 0.869±0.28 0.868±0.63 1.370±0.26 0.364±0.12 1.850±0.14 1.241±0.56 1.414±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UH CIL_0008UH_0002 VISTA 1:165634234-166236307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0030910 IGI olfactory placode formation
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 ISO negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060235 IGI lens induction in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144272 pou2f1b-002 protein_coding Danio_rerio 0 601
ENSDART00000035522 pou2f1b-201 protein_coding Danio_rerio 0 556
ENSDART00000146480 pou2f1b-001 protein_coding Danio_rerio 0 556
ENSDART00000147913 pou2f1b-003 protein_coding Danio_rerio 0 409
ENST00000271411 POU2F1-001 nonsense_mediated_decay Homo_sapiens 0 2065
ENST00000367862 POU2F1-003 protein_coding Homo_sapiens 0 2220
ENST00000367865 POU2F1-004 processed_transcript Homo_sapiens 0 1982
ENST00000367866 POU2F1-002 protein_coding Homo_sapiens 0 2067
ENST00000420254 POU2F1-014 protein_coding Homo_sapiens 0 1166
ENST00000429375 POU2F1-010 protein_coding Homo_sapiens 0 1982
ENST00000442313 POU2F1-007 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000443275 POU2F1-005 protein_coding Homo_sapiens 0 1982
ENST00000470928 POU2F1-008 processed_transcript Homo_sapiens 0 787
ENST00000490100 POU2F1-009 retained_intron Homo_sapiens 0 189
ENST00000492850 POU2F1-006 processed_transcript Homo_sapiens 0 403
ENST00000541643 POU2F1-017 protein_coding Homo_sapiens 0 2065
ENST00000557909 POU2F1-016 processed_transcript Homo_sapiens 0 521
ENST00000559038 POU2F1-012 processed_transcript Homo_sapiens 0 215
ENST00000559648 POU2F1-015 processed_transcript Homo_sapiens 0 388
ENST00000560232 POU2F1-011 nonsense_mediated_decay Homo_sapiens 0 1016

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