C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4353
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111755 Gm4353-201 ENSMUSG00000091900 10090 - 7:116082863-116084635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111755 0.394±0.08 0.603±0.09 0.170±0.06 0.636±0.32 0.480±0.11 0.402±0.15 0.168±0.04 0.267±0.13 0.241±0.16 0.299±0.11 0.063±0.03 0.722±0.38 1.399±1.77 1.039±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081X CIL_00081X_0002 VISTA 7:115524528-116125832
CIL_0008LR CIL_0008LR_0002 VISTA 7:115564594-116167473
CIL_000836 CIL_000836_0002 VISTA 7:115904293-116509702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0031965 IEA nuclear membrane
GO:0051028 IEA mRNA transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295119 NUP35-001 protein_coding Homo_sapiens 0 1168
ENST00000374930 NUP35-004 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000409798 NUP35-002 protein_coding Homo_sapiens 0 1133
ENST00000422734 RP11-183E9.2-001 processed_pseudogene Homo_sapiens 0 822
ENST00000442895 NUP35-005 protein_coding Homo_sapiens 0 329
ENST00000446612 NUP35-006 protein_coding Homo_sapiens 0 466
ENST00000452137 NUP35-010 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000455063 NUP35-008 protein_coding Homo_sapiens 0 259
ENST00000479162 NUP35-003 retained_intron Homo_sapiens 0 499
ENST00000497330 NUP35-009 processed_transcript Homo_sapiens 0 451

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