C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 35kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409798 NUP35-002 ENSG00000163002 9606 + 2:183117514-183161438 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonTestisENST00000409798
Transcript ID Colon Testis
ENST00000409798 1.139±0.00 1.632±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q9 CIL_0000Q9_0001 CGP 2:183078559-183161680
CIL_0000QA CIL_0000QA_0001 CGP 2:183117513-184939492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005634 IDA nucleus
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005886 IDA plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA:IEA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051028 IEA mRNA transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028382 Nup35-001 protein_coding Mus_musculus 0 1144
ENSMUST00000111755 Gm4353-201 protein_coding Mus_musculus 0 1133
ENSMUST00000135305 Nup35-005 processed_transcript Mus_musculus 0 893
ENSMUST00000124377 Nup35-002 protein_coding Mus_musculus 0 647
ENSMUST00000144697 Nup35-003 processed_transcript Mus_musculus 0 464
ENSMUST00000127926 Nup35-004 processed_transcript Mus_musculus 0 344

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