C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 35kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374930 NUP35-004 ENSG00000163002 9606 + 2:183124412-183161244 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000374930
Transcript ID Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000374930 0.643±0.00 1.379±0.39 0.688±0.00 2.260±0.00 0.743±0.00 0.868±0.00 2.414±0.55 1.370±0.00 3.380±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q9 CIL_0000Q9_0001 CGP 2:183078559-183161680
CIL_0000QA CIL_0000QA_0001 CGP 2:183117513-184939492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124377 Nup35-002 protein_coding Mus_musculus 0 499
ENSMUST00000028382 Nup35-001 protein_coding Mus_musculus 0 499
ENSMUST00000111755 Gm4353-201 protein_coding Mus_musculus 0 499
ENSMUST00000135305 Nup35-005 processed_transcript Mus_musculus 0 468
ENSMUST00000144697 Nup35-003 processed_transcript Mus_musculus 0 464

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