C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111773 Rbms3-001 ENSMUSG00000039607 10090 - 9:116572746-117252463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111773 2.898±0.90 1.471±0.30 6.633±0.95 7.531±0.00 2.472±0.39 0.971±0.15 1.365±0.00 1.712±0.52 0.346±0.16 6.013±2.45 0.260±0.00 2.893±1.14 0.513±0.38 0.178±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028F CIL_00028F_0002 CGP 9:116087698-117629913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IEA cytoplasm
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273139 RBMS3-007 protein_coding Homo_sapiens 0 1428
ENST00000383766 RBMS3-005 protein_coding Homo_sapiens 0 1249
ENST00000383767 RBMS3-001 protein_coding Homo_sapiens 0 1921
ENST00000434693 RBMS3-002 protein_coding Homo_sapiens 0 1914
ENST00000445033 RBMS3-004 protein_coding Homo_sapiens 0 1116
ENST00000452462 RBMS3-008 protein_coding Homo_sapiens 0 1408
ENST00000456853 RBMS3-006 protein_coding Homo_sapiens 0 992
ENST00000471426 RBMS3-009 retained_intron Homo_sapiens 0 403
ENST00000473799 RBMS3-014 processed_transcript Homo_sapiens 0 444
ENST00000497205 RBMS3-011 retained_intron Homo_sapiens 0 448
ENST00000497274 RBMS3-015 processed_transcript Homo_sapiens 0 287
ENST00000497319 RBMS3-013 processed_transcript Homo_sapiens 0 516

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