C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glia maturation factor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111817 Gmfb-001 ENSMUSG00000062014 10090 - 14:46808149-46822242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111817 9.590±1.13 6.964±0.71 15.355±0.45 16.689±3.02 7.611±2.24 3.616±1.65 4.735±0.57 12.473±0.94 7.158±4.67 13.957±5.02 3.738±0.95 7.955±3.62 18.915±6.25 10.165±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0000HV CIL_0000HV_0002 CGP 14:46775582-46822242
CIL_0000HK CIL_0000HK_0002 CGP 14:46808149-46854193

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005622 IEA intracellular
GO:0007612 IMP learning
GO:0007626 IMP locomotory behavior
GO:0008083 IEA growth factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358056 GMFB-001 protein_coding Homo_sapiens 0 1168
ENST00000467831 GMFBP1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000553333 GMFB-004 protein_coding Homo_sapiens 0 532
ENST00000553566 GMFB-008 processed_transcript Homo_sapiens 0 267
ENST00000553952 GMFB-003 retained_intron Homo_sapiens 0 209
ENST00000554163 GMFB-006 retained_intron Homo_sapiens 0 579
ENST00000554247 GMFB-005 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000554682 GMFB-007 retained_intron Homo_sapiens 0 276
ENST00000554908 GMFB-002 protein_coding Homo_sapiens 0 636
ENST00000616146 GMFB-201 protein_coding Homo_sapiens 0 1162

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