C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 5 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112286 Bbs5-003 ENSMUSG00000063145 10090 + 2:69647216-69667571 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000112286
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112286 1.068±0.48 0.203±0.00 0.698±0.20 0.224±0.09 0.374±0.09 0.449±0.11 0.926±0.00 1.025±0.28 4.171±0.00 12.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_00063E CIL_00063E_0002 CGP 2:69424340-69667571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0034464 IDA BBSome
GO:0036064 ISO ciliary basal body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295240 BBS5-001 protein_coding Homo_sapiens 0 669
ENST00000392663 BBS5-002 protein_coding Homo_sapiens 0 1164
ENST00000443151 BBS5-005 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000472667 BBS5-003 retained_intron Homo_sapiens 0 496
ENST00000513963 RP11-724O16.1-001 protein_coding Homo_sapiens 0 669

Loading