C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112320 Spc25-003 ENSMUSG00000005233 10090 - 2:69193895-69206135 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000112320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112320 0.745±0.44 0.385±0.12 0.374±0.02 3.081±0.56 0.319±0.19 0.762±0.31 0.111±0.02 4.401±0.63 7.059±7.52 0.274±0.00 1.437±0.69 8.557±0.59 0.866±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_000639 CIL_000639_0002 CGP 2:69135800-69206194
CIL_00063A CIL_00063A_0002 CGP 2:69193895-69227841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000777 ISS condensed chromosome kinetochore
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007052 ISS mitotic spindle organization
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0031262 ISS Ndc80 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282074 SPC25-001 protein_coding Homo_sapiens 0 555
ENST00000479309 SPC25-002 processed_transcript Homo_sapiens 0 366
ENST00000611144 SPC25-001 protein_coding Homo_sapiens 0 545
ENST00000612084 SPC25-002 processed_transcript Homo_sapiens 0 366
ENST00000616584 SPC25-201 protein_coding Homo_sapiens 0 555

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