C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112420 Slc38a11-201 ENSMUSG00000061171 10090 - 2:65316633-65364026 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENSMUST00000112420
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENSMUST00000112420 0.878±0.37 3.813±1.23 0.161±0.01 0.200±0.07 0.774±0.32 0.353±0.19 0.314±0.12 0.258±0.11 0.222±0.09 0.481±0.10 0.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CM CIL_0006CM_0002 CGP 2:65088339-65364034
CIL_0006CP CIL_0006CP_0002 CGP 2:65316430-65567627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303735 SLC38A11-001 protein_coding Homo_sapiens 0 889
ENST00000409058 SLC38A11-002 protein_coding Homo_sapiens 0 1122
ENST00000409149 SLC38A11-003 protein_coding Homo_sapiens 0 1216
ENST00000409662 SLC38A11-009 protein_coding Homo_sapiens 0 1216
ENST00000424914 SLC38A11-010 protein_coding Homo_sapiens 0 316
ENST00000470576 SLC38A11-008 retained_intron Homo_sapiens 0 268
ENST00000483641 SLC38A11-007 retained_intron Homo_sapiens 0 477
ENST00000492134 SLC38A11-004 retained_intron Homo_sapiens 0 337

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