C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF family member-associated Nf-kappa B activator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112494 Tank-003 ENSMUSG00000064289 10090 + 2:61593136-61651799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112494
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112494 2.073±0.49 0.905±0.18 3.572±0.75 2.292±0.50 2.140±0.57 0.790±0.16 0.794±0.28 0.734±0.21 2.311±1.46 1.532±0.26 0.402±0.00 1.433±0.92 1.104±0.23 0.888±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171
CIL_0008JH CIL_0008JH_0002 VISTA 2:61356142-61956716
CIL_0005L0 CIL_0005L0_0002 CGP 2:61578585-61800376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259075 TANK-001 protein_coding Homo_sapiens 0 1122
ENST00000392749 TANK-002 protein_coding Homo_sapiens 0 1151
ENST00000405852 TANK-004 protein_coding Homo_sapiens 0 1136
ENST00000437623 TANK-023 protein_coding Homo_sapiens 0 736
ENST00000439442 TANK-020 protein_coding Homo_sapiens 0 285
ENST00000468831 TANK-013 retained_intron Homo_sapiens 0 839

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