C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF family member-associated Nf-kappa B activator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112495 Tank-002 ENSMUSG00000064289 10090 + 2:61593077-61654171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112495 8.189±2.29 3.211±1.77 10.148±2.16 6.336±1.46 3.641±1.08 3.354±0.85 3.495±0.79 2.844±0.21 5.604±2.90 3.624±0.47 4.211±0.33 4.045±2.46 4.880±1.22 2.215±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171
CIL_0008JH CIL_0008JH_0002 VISTA 2:61356142-61956716
CIL_0005L0 CIL_0005L0_0002 CGP 2:61578585-61800376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259075 TANK-001 protein_coding Homo_sapiens 0 1122
ENST00000392749 TANK-002 protein_coding Homo_sapiens 0 1205
ENST00000405852 TANK-004 protein_coding Homo_sapiens 0 1136
ENST00000437623 TANK-023 protein_coding Homo_sapiens 0 736
ENST00000439442 TANK-020 protein_coding Homo_sapiens 0 285
ENST00000468831 TANK-013 retained_intron Homo_sapiens 0 839

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