C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heparanase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112908 Hpse-002 ENSMUSG00000035273 10090 - 5:100684581-100719705 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryTestisENSMUST00000112908
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000112908 0.862±0.15 0.555±0.37 0.110±0.00 5.706±4.22 7.238±1.15 0.152±0.00 0.274±0.08 2.352±0.04 1.886±0.66 0.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069P CIL_00069P_0002 CGP 5:100654723-100719716
CIL_0006JB CIL_0006JB_0002 CGP 5:100679484-100798598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005975 IEA carbohydrate metabolic process
GO:0016020 IEA membrane
GO:0030305 ISO heparanase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311412 HPSE-002 protein_coding Homo_sapiens 0 1098
ENST00000405413 HPSE-001 protein_coding Homo_sapiens 0 1098
ENST00000507150 HPSE-004 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000508891 HPSE-007 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000509906 HPSE-006 nonsense_mediated_decay Homo_sapiens 0 789
ENST00000512196 HPSE-005 protein_coding Homo_sapiens 0 706
ENST00000513463 HPSE-003 protein_coding Homo_sapiens 0 658

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