C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cereblon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113239 Crbn-001 ENSMUSG00000005362 10090 - 6:106780201-106800074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113239 4.522±0.98 4.968±0.60 7.503±0.00 3.713±0.00 2.947±0.30 2.816±0.02 3.543±0.67 5.268±1.01 4.511±1.21 4.656±1.17 5.532±0.00 6.339±2.53 5.981±0.26 10.893±2.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050N CIL_00050N_0002 CGP 6:106711975-106782474
CIL_00050M CIL_00050M_0002 CGP 6:106769120-106800074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004176 IEA ATP-dependent peptidase activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016567 ISS protein ubiquitination
GO:0031464 ISS Cul4A-RING E3 ubiquitin ligase complex
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231948 CRBN-001 protein_coding Homo_sapiens 0 1729
ENST00000424814 CRBN-005 protein_coding Homo_sapiens 0 1251
ENST00000432408 CRBN-004 protein_coding Homo_sapiens 0 1716
ENST00000450014 CRBN-010 protein_coding Homo_sapiens 0 765
ENST00000459840 CRBN-009 retained_intron Homo_sapiens 0 815
ENST00000478353 CRBN-011 retained_intron Homo_sapiens 0 438
ENST00000480249 CRBN-008 retained_intron Homo_sapiens 0 556
ENST00000482844 CRBN-007 retained_intron Homo_sapiens 0 599
ENST00000488263 CRBN-006 retained_intron Homo_sapiens 0 527
ENST00000491834 CRBN-003 retained_intron Homo_sapiens 0 667
ENST00000498442 CRBN-013 retained_intron Homo_sapiens 0 529
ENST00000498700 CRBN-012 retained_intron Homo_sapiens 0 614

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