C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398540 FRMD4B-001 ENSG00000114541 9606 - 3:69169990-69386073 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000398540
Transcript ID Adrenal Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000398540 2.514±0.00 2.100±1.69 0.675±0.06 0.756±0.40 2.476±0.00 1.478±0.29 0.302±0.00 1.097±0.57 2.044±0.71 0.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AY CIL_0003AY_0001 CGP 3:69106872-69542583
CIL_0001TC CIL_0001TC_0002 CGP 3:69169990-69968337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0090162 IEA establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032146 Frmd4b-003 protein_coding Mus_musculus 0 3542
ENSMUST00000113359 Frmd4b-005 protein_coding Mus_musculus 0 3404
ENSMUST00000113355 Frmd4b-001 protein_coding Mus_musculus 0 3404
ENSMUST00000143698 Frmd4b-007 processed_transcript Mus_musculus 0 2590
ENSMUST00000113353 Frmd4b-004 protein_coding Mus_musculus 0 996
ENSMUST00000138301 Frmd4b-011 processed_transcript Mus_musculus 0 569
ENSMUST00000152385 Frmd4b-010 processed_transcript Mus_musculus 0 553
ENSMUST00000142589 Frmd4b-002 retained_intron Mus_musculus 0 462
ENSMUST00000124050 Frmd4b-009 processed_transcript Mus_musculus 0 302

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