C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113577 Asic4-002 ENSMUSG00000033007 10090 + 1:75450436-75474340 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverOvaryPlacentaENSMUST00000113577
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000113577 0.033±0.00 1.288±0.70 0.034±0.00 3.071±0.93 0.034±0.00 0.012±0.00 0.035±0.00 0.035±0.00 0.148±0.03 0.042±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000415 CIL_000415_0003 CGP 1:75435930-75474343
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297512 ASIC3-005 protein_coding Homo_sapiens 8.00001e-41 172
ENST00000347842 ASIC4-001 protein_coding Homo_sapiens 0 2990
ENST00000349064 ASIC3-003 protein_coding Homo_sapiens 8.99998e-41 172
ENST00000357922 ASIC3-001 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000358078 ASIC4-002 protein_coding Homo_sapiens 0 2078
ENST00000377904 ASIC3-002 nonsense_mediated_decay Homo_sapiens 9.99995e-41 172
ENST00000461395 ASIC4-004 retained_intron Homo_sapiens 0 1844
ENST00000468325 ASIC3-004 nonsense_mediated_decay Homo_sapiens 8.00001e-41 172
ENST00000473709 ASIC4-005 processed_transcript Homo_sapiens 0 610
ENST00000474135 ASIC3-006 retained_intron Homo_sapiens 2e-38 163
ENST00000474489 ASIC4-003 retained_intron Homo_sapiens 0 610

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