C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T cell lymphoma invasion and metastasis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114124 Tiam1-001 ENSMUSG00000002489 10090 - 16:89787111-89974699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSMUST00000114124
Transcript ID Kidney
ENSMUST00000114124 0.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000886 CIL_000886_0002 VISTA 16:89609485-90210340
CIL_0000MO CIL_0000MO_0003 CGP 16:89787111-90226322

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005057 IEA receptor signaling protein activity
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005543 IDA phospholipid binding
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0007160 IEA cell-matrix adhesion
GO:0007264 IDA small GTPase mediated signal transduction
GO:0016477 IEA cell migration
GO:0016601 IEA Rac protein signal transduction
GO:0030676 IEA Rac guanyl-nucleotide exchange factor activity
GO:0031234 IEA extrinsic component of cytoplasmic side of plasma membrane
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032855 IEA positive regulation of Rac GTPase activity
GO:0043547 IDA positive regulation of GTPase activity
GO:0044291 IEA cell-cell contact zone
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050772 IMP positive regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089694 TIAM1 (1 of 2)-201 protein_coding Danio_rerio 0 658
ENST00000286827 TIAM1-001 protein_coding Homo_sapiens 0 6355
ENST00000423206 TIAM1-005 protein_coding Homo_sapiens 0 303
ENST00000455508 TIAM1-003 protein_coding Homo_sapiens 0 1240
ENST00000469412 TIAM1-002 processed_transcript Homo_sapiens 0 1548
ENST00000541036 TIAM1-201 protein_coding Homo_sapiens 0 3020

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