C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078430-ENSDARG00000043848 CGP 7955 10:26207182-26333884
GeneTranscriptPositionBiotype
ENSDARG00000043848 (sod1)
superoxide dismutase 1, soluble 		ENSDART00000064376 (sod1-001) 26328825-26333884 protein_coding
ENSDART00000135058 (sod1-002) 26331589-26333789 retained_intron
ENSDARG00000078430 (tiam1a)
T-cell lymphoma invasion and metastasis 1a 		ENSDART00000110751 (tiam1a-201) 26207182-26260151 protein_coding
ENSDART00000131640 (tiam1a-002) 26216371-26225624 protein_coding
ENSDART00000138262 (tiam1a-003) 26208987-26210003 retained_intron
ENSDART00000143978 (tiam1a-001) 26207199-26262985 protein_coding
CIL_0000MO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156299-ENSG00000142168 CGP 9606 21:31118416-31668931
GeneTranscriptPositionBiotype
ENSG00000142168 (SOD1)
superoxide dismutase 1, soluble 		ENST00000270142 (SOD1-001) 31659622-31668931 protein_coding
ENST00000389995 (SOD1-002) 31659666-31668931 protein_coding
ENST00000470944 (SOD1-003) 31659709-31668931 processed_transcript
ENST00000476106 (SOD1-004) 31659693-31667341 processed_transcript
ENSG00000156299 (TIAM1)
T-cell lymphoma invasion and metastasis 1 		ENST00000286827 (TIAM1-001) 31118416-31558977 protein_coding
ENST00000423206 (TIAM1-005) 31118418-31130221 protein_coding
ENST00000455508 (TIAM1-003) 31266296-31344279 protein_coding
ENST00000469412 (TIAM1-002) 31212631-31559977 processed_transcript
ENST00000491927 (TIAM1-004) 31123939-31130306 retained_intron
ENST00000541036 (TIAM1-201) 31118418-31558977 protein_coding
ENSG00000230870 (FBXW11P1)
F-box and WD repeat domain containing 11 pseudogene 1 		ENST00000393804 (FBXW11P1-001) 31627127-31628600 processed_pseudogene
ENSG00000234509 (AP000253.1)
 ENST00000449339 (AP000253.1-001) 31653593-31659500 lincRNA
ENSG00000237325 (AP000563.2)
 ENST00000490865 (AP000563.2-001) 31452466-31453223 processed_pseudogene
ENSG00000237594 (AP000251.3)
 ENST00000433071 (AP000251.3-001) 31559245-31560487 antisense
ENSG00000238390 (SNORA81)
Small nucleolar RNA SNORA81 		ENST00000458922 (SNORA81.1-201) 31664306-31664482 snoRNA
ENSG00000273271 (AP000254.8)
 ENST00000609934 (AP000254.8-001) 31666728-31667247 antisense
CIL_0000MO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002489-ENSMUSG00000022982 CGP 10090 16:89787111-90226322
GeneTranscriptPositionBiotype
ENSMUSG00000002489 (Tiam1)
T cell lymphoma invasion and metastasis 1 		ENSMUST00000002588 (Tiam1-201) 89787111-89960827 protein_coding
ENSMUST00000089084 (Tiam1-013) 89787858-89837875 retained_intron
ENSMUST00000114122 (Tiam1-009) 89787111-89857817 protein_coding
ENSMUST00000114124 (Tiam1-001) 89787111-89974699 protein_coding
ENSMUST00000124433 (Tiam1-002) 89908221-89956107 retained_intron
ENSMUST00000130951 (Tiam1-008) 89898351-89960737 processed_transcript
ENSMUST00000134021 (Tiam1-004) 89791685-89799990 protein_coding
ENSMUST00000136760 (Tiam1-006) 89955965-89980080 processed_transcript
ENSMUST00000139544 (Tiam1-005) 89898421-89918985 processed_transcript
ENSMUST00000144691 (Tiam1-010) 89787116-89798041 protein_coding
ENSMUST00000151655 (Tiam1-011) 89898310-89974699 processed_transcript
ENSMUST00000155915 (Tiam1-007) 89908548-89973899 processed_transcript
ENSMUST00000163370 (Tiam1-202) 89787111-89974699 protein_coding
ENSMUST00000164263 (Tiam1-003) 89787730-89818352 protein_coding
ENSMUST00000178095 (Tiam1-012) 89788422-89795282 processed_transcript
ENSMUSG00000022982 (Sod1)
superoxide dismutase 1, soluble 		ENSMUST00000023707 (Sod1-201) 90220742-90226322 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MO_0001ENSDARG00000043848ENSDART00000064376ENSDART00000135058ENSDARG00000078430ENSDART00000110751ENSDART00000131640ENSDART00000138262ENSDART00000143978CIL_0000MO_0002ENSG00000142168ENST00000270142ENST00000389995ENST00000470944ENST00000476106ENSG00000156299ENST00000286827ENST00000423206ENST00000455508ENST00000469412ENST00000491927ENST00000541036ENSG00000230870ENST00000393804ENSG00000234509ENST00000449339ENSG00000237325ENST00000490865ENSG00000237594ENST00000433071ENSG00000238390ENST00000458922ENSG00000273271ENST00000609934CIL_0000MO_0003ENSMUSG00000002489ENSMUST00000002588ENSMUST00000089084ENSMUST00000114122ENSMUST00000114124ENSMUST00000124433ENSMUST00000130951ENSMUST00000134021ENSMUST00000136760ENSMUST00000139544ENSMUST00000144691ENSMUST00000151655ENSMUST00000155915ENSMUST00000163370ENSMUST00000164263ENSMUST00000178095ENSMUSG00000022982ENSMUST00000023707
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MO_0001ENSDARG00000043848ENSDART00000064376ENSDARG00000078430ENSDART00000110751CIL_0000MO_0002ENSG00000142168ENST00000270142ENST00000389995ENST00000476106ENSG00000156299ENST00000286827ENST00000455508ENST00000469412ENST00000541036ENSG00000230870ENST00000393804ENSG00000234509ENST00000449339ENSG00000237325ENST00000490865ENSG00000237594ENST00000433071ENSG00000238390ENST00000458922ENSG00000273271ENST00000609934CIL_0000MO_0003ENSMUSG00000002489ENSMUST00000002588ENSMUST00000089084ENSMUST00000114122ENSMUST00000114124ENSMUST00000134021ENSMUST00000144691ENSMUST00000163370ENSMUST00000164263ENSMUST00000178095ENSMUSG00000022982ENSMUST00000023707
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043848 ENSDART00000064376 N/A N/A N/A 78.680±47.82 N/A N/A 51.041±44.10 60.072±78.92 30.333±0.00 N/A 35.053±0.00 N/A N/A N/A
ENSDART00000135058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078430 ENSDART00000110751 N/A N/A N/A 3.132±0.90 N/A N/A N/A 3.848±1.14 0.103±0.00 N/A N/A N/A N/A N/A
ENSDART00000131640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142168 ENST00000270142 94.079±0.00 87.421±0.00 27.326±0.00 196.724±17.26 60.454±20.15 110.535±63.32 36.117±9.41 242.435±91.16 163.843±121.70 51.321±18.42 59.996±8.86 135.108±54.26 152.616±24.83 120.316±25.73
ENST00000389995 N/A N/A N/A N/A 17.167±0.00 N/A 13.936±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000470944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476106 44.948±0.00 47.081±0.00 N/A N/A 75.199±0.00 N/A N/A N/A N/A 32.668±0.00 N/A 86.177±0.00 62.334±0.00 72.121±0.00
ENSG00000156299 ENST00000286827 N/A N/A 0.055±0.00 N/A N/A N/A N/A 1.317±0.00 N/A 2.139±0.00 N/A 0.346±0.11 N/A 2.352±1.15
ENST00000423206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.063±0.00 1.261±0.00 N/A N/A
ENST00000469412 N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000491927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541036 0.520±0.00 0.926±0.00 N/A 5.823±0.00 0.534±0.08 N/A 0.057±0.00 0.471±0.00 0.260±0.00 0.773±0.00 0.028±0.00 0.262±0.00 N/A 1.780±0.98
ENSG00000230870 ENST00000393804 0.059±0.00 0.155±0.00 N/A 0.151±0.00 0.025±0.00 0.237±0.00 0.039±0.00 0.150±0.00 0.195±0.03 N/A 0.052±0.00 0.090±0.03 0.094±0.06 0.744±0.30
ENSG00000234509 ENST00000449339 0.198±0.00 0.439±0.00 0.161±0.00 0.224±0.00 0.176±0.01 0.100±0.08 0.145±0.07 0.296±0.08 0.158±0.00 0.065±0.02 0.125±0.00 0.191±0.10 0.233±0.00 0.472±0.00
ENSG00000237325 ENST00000490865 N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A N/A 0.053±0.00
ENSG00000237594 ENST00000433071 N/A N/A N/A N/A 0.217±0.00 0.033±0.00 N/A N/A N/A N/A N/A 0.188±0.18 0.139±0.04 0.274±0.05
ENSG00000238390 ENST00000458922 0.640±0.00 0.644±0.00 N/A 0.400±0.00 0.231±0.00 N/A 0.149±0.00 N/A 0.486±0.00 0.070±0.00 N/A 1.376±1.20 N/A 0.216±0.00
ENSG00000273271 ENST00000609934 2.279±0.00 7.032±0.00 N/A 2.376±0.87 3.051±1.64 1.492±0.00 1.419±0.00 1.879±0.15 0.955±0.49 N/A 1.618±0.57 3.381±2.25 0.909±0.24 2.369±0.50
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002489 ENSMUST00000002588 0.707±0.00 1.307±0.00 2.567±0.00 4.165±3.15 0.250±0.00 N/A 0.749±0.00 N/A 0.120±0.00 1.464±0.73 N/A 1.125±0.30 1.923±1.35 N/A
ENSMUST00000089084 0.591±0.26 1.865±0.08 N/A 13.562±0.00 0.881±0.29 0.779±0.11 0.252±0.00 N/A N/A 0.734±0.12 N/A 1.263±0.94 5.617±3.72 4.710±0.00
ENSMUST00000114122 N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A 0.106±0.06 N/A N/A 1.087±0.14 N/A 1.066±0.00
ENSMUST00000114124 N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000124433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134021 N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144691 N/A N/A N/A N/A N/A N/A N/A N/A 0.642±0.00 N/A N/A N/A N/A N/A
ENSMUST00000151655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163370 0.269±0.06 2.210±0.78 N/A 3.055±0.00 0.353±0.15 0.534±0.05 0.149±0.00 0.426±0.11 0.138±0.18 1.033±0.00 N/A 0.827±0.37 N/A 0.685±0.00
ENSMUST00000164263 N/A N/A N/A 3.838±2.57 N/A N/A N/A 0.323±0.05 0.095±0.06 2.012±0.80 1.481±0.68 N/A N/A N/A
ENSMUST00000178095 N/A N/A N/A N/A N/A 0.789±0.00 N/A N/A 0.210±0.05 1.369±0.00 N/A N/A N/A N/A
ENSMUSG00000022982 ENSMUST00000023707 307.701±37.23 458.905±147.51 583.193±38.70 295.543±105.44 283.570±7.95 194.687±16.98 203.975±13.06 537.295±52.18 826.094±251.42 320.687±25.24 186.820±5.22 408.648±278.85 469.129±121.52 237.608±121.96

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