C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium channel, subfamily T, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114176 Kcnt1-004 ENSMUSG00000058740 10090 + 2:25877875-25918273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114176
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114176 0.878±0.14 0.687±0.11 2.551±0.08 0.022±0.02 0.097±0.04 0.064±0.00 3.423±1.47 0.008±0.00 0.016±0.01 0.025±0.00 2.047±0.70 0.002±0.00 0.317±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EW CIL_0001EW_0002 CGP 2:25842995-25918273
CIL_0001EV CIL_0001EV_0002 CGP 2:25863795-25983282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005249 IBA voltage-gated potassium channel activity
GO:0008076 IBA voltage-gated potassium channel complex
GO:0015269 IBA calcium-activated potassium channel activity
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110065 CR392045.1-201 protein_coding Danio_rerio 0 638
ENST00000263604 KCNT1-201 protein_coding Homo_sapiens 0 4106
ENST00000371757 KCNT1-002 protein_coding Homo_sapiens 0 4076
ENST00000460750 KCNT1-003 nonsense_mediated_decay Homo_sapiens 0 3631
ENST00000473941 KCNT1-010 protein_coding Homo_sapiens 0 926
ENST00000486577 KCNT1-007 protein_coding Homo_sapiens 0 3893
ENST00000487664 KCNT1-001 protein_coding Homo_sapiens 0 3825
ENST00000488444 KCNT1-005 protein_coding Homo_sapiens 0 4187
ENST00000490355 KCNT1-006 protein_coding Homo_sapiens 0 4128
ENST00000490363 KCNT1-009 retained_intron Homo_sapiens 0 3079
ENST00000491806 KCNT1-004 protein_coding Homo_sapiens 0 3873

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