C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adducin 1 (alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114340 Add1-005 ENSMUSG00000029106 10090 + 5:34573873-34632308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114340 39.106±9.76 15.717±1.99 56.959±4.26 18.838±8.29 26.190±3.55 27.787±2.40 14.917±2.60 23.580±1.82 11.560±8.81 41.542±4.88 10.970±1.47 34.892±15.43 34.350±9.16 6.990±2.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074C CIL_00074C_0002 CGP 5:34525838-34632308
CIL_00056E CIL_00056E_0002 CGP 5:34573664-34637212

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0005198 IDA structural molecule activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005856 IDA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006884 IMP cell volume homeostasis
GO:0008134 IEA transcription factor binding
GO:0008290 IEA F-actin capping protein complex
GO:0014069 IEA postsynaptic density
GO:0016020 IDA membrane
GO:0020027 IMP hemoglobin metabolic process
GO:0030218 IMP erythrocyte differentiation
GO:0030425 IEA dendrite
GO:0030507 IEA spectrin binding
GO:0030837 IEA negative regulation of actin filament polymerization
GO:0032092 IEA positive regulation of protein binding
GO:0035264 IMP multicellular organism growth
GO:0042608 IEA T cell receptor binding
GO:0042803 IEA protein homodimerization activity
GO:0043197 IEA dendritic spine
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0045202 IEA synapse
GO:0045766 IEA positive regulation of angiogenesis
GO:0045807 IEA positive regulation of endocytosis
GO:0046982 IEA protein heterodimerization activity
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048873 IMP homeostasis of number of cells within a tissue
GO:0051015 IEA actin filament binding
GO:0051016 IEA barbed-end actin filament capping
GO:0051017 IEA actin filament bundle assembly
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264758 ADD1-201 protein_coding Homo_sapiens 0 1836
ENST00000355842 ADD1-002 protein_coding Homo_sapiens 0 2137
ENST00000398123 ADD1-003 protein_coding Homo_sapiens 0 1827
ENST00000398125 ADD1-202 protein_coding Homo_sapiens 0 1836
ENST00000398129 ADD1-001 protein_coding Homo_sapiens 0 2726
ENST00000446856 ADD1-203 protein_coding Homo_sapiens 0 1515
ENST00000503169 ADD1-006 retained_intron Homo_sapiens 0 1831
ENST00000503455 ADD1-013 protein_coding Homo_sapiens 0 1832
ENST00000506157 ADD1-007 retained_intron Homo_sapiens 0 472
ENST00000508277 ADD1-009 protein_coding Homo_sapiens 0 268
ENST00000508684 ADD1-008 retained_intron Homo_sapiens 0 1116
ENST00000509039 ADD1-005 retained_intron Homo_sapiens 0 1489
ENST00000510101 ADD1-010 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000511797 ADD1-011 protein_coding Homo_sapiens 0 510
ENST00000513328 ADD1-014 protein_coding Homo_sapiens 0 2420
ENST00000513762 ADD1-012 retained_intron Homo_sapiens 0 320
ENST00000514940 ADD1-015 protein_coding Homo_sapiens 0 730
ENST00000534870 ADD1-017 retained_intron Homo_sapiens 0 603
ENST00000536078 ADD1-019 retained_intron Homo_sapiens 0 483
ENST00000536424 ADD1-022 protein_coding Homo_sapiens 0 379
ENST00000540541 ADD1-018 retained_intron Homo_sapiens 0 267
ENST00000541051 ADD1-020 retained_intron Homo_sapiens 0 579

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