C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114952 Galnt11-002 ENSMUSG00000038072 10090 + 5:25246373-25265917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000114952
Transcript ID Adipose Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000114952 1.740±0.00 13.293±0.00 9.219±0.00 1.156±0.42 2.365±1.49 6.175±2.92 6.870±2.24 1.340±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T7 CIL_0007T7_0002 VISTA 5:24699254-25303507
CIL_0007T1 CIL_0007T1_0002 VISTA 5:24708595-25311977
CIL_00027A CIL_00027A_0002 CGP 5:25222882-25498783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 ISS polypeptide N-acetylgalactosaminyltransferase activity
GO:0005112 ISS Notch binding
GO:0005575 ND cellular_component
GO:0005794 IEA Golgi apparatus
GO:0007220 ISS Notch receptor processing
GO:0007368 ISS determination of left/right symmetry
GO:0008593 ISS regulation of Notch signaling pathway
GO:0016021 IEA integral component of membrane
GO:0018243 ISS protein O-linked glycosylation via threonine
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0060271 ISS cilium morphogenesis
GO:0061314 ISS Notch signaling involved in heart development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000430044 GALNT11-008 protein_coding Homo_sapiens 0 1947
ENST00000431940 GALNT11-014 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000434507 GALNT11-003 protein_coding Homo_sapiens 0 1947
ENST00000447778 GALNT11-004 nonsense_mediated_decay Homo_sapiens 0 880
ENST00000491061 GALNT11-006 retained_intron Homo_sapiens 0 824

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