C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115028 Itgb5-001 ENSMUSG00000022817 10090 + 16:33829665-33949146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115028 67.457±13.61 117.693±7.41 32.714±4.80 9.046±1.98 41.149±8.87 35.555±2.44 27.667±4.15 58.395±7.18 19.406±6.90 52.452±5.13 27.718±3.60 83.561±22.39 37.418±27.22 10.687±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0031252 IDA cell leading edge
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296181 ITGB5-001 protein_coding Homo_sapiens 0 2689
ENST00000460797 ITGB5-002 retained_intron Homo_sapiens 0 510
ENST00000465464 ITGB5-003 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000474838 ITGB5-007 processed_transcript Homo_sapiens 0 412
ENST00000476988 ITGB5-009 processed_transcript Homo_sapiens 0 444
ENST00000481591 ITGB5-008 protein_coding Homo_sapiens 0 870
ENST00000483168 ITGB5-004 protein_coding Homo_sapiens 0 549
ENST00000488466 ITGB5-010 protein_coding Homo_sapiens 0 712
ENST00000496703 ITGB5-011 protein_coding Homo_sapiens 0 536
ENST00000608107 ITGB5-015 protein_coding Homo_sapiens 0 481
ENST00000608657 ITGB5-013 protein_coding Homo_sapiens 0 809

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