C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 2, 20kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321256 NCBP2-001 ENSG00000114503 9606 - 3:196935407-196942597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321256
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321256 8.944±0.00 3.131±0.00 10.349±1.20 7.299±0.38 10.764±5.04 4.360±2.32 9.735±7.21 3.562±0.50 4.550±0.38 3.360±1.69 19.882±7.92 13.080±2.25 22.764±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070W CIL_00070W_0002 CGP 3:196867856-196942597

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA:NAS RNA cap binding
GO:0000340 IDA RNA 7-methylguanosine cap binding
GO:0000387 TAS spliceosomal snRNP assembly
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005845 IDA mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006370 IDA 7-methylguanosine mRNA capping
GO:0006406 TAS mRNA export from nucleus
GO:0006408 ISS snRNA export from nucleus
GO:0006446 IDA regulation of translational initiation
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 ISS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031047 IEA gene silencing by RNA
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045292 IEA:IDA mRNA cis splicing, via spliceosome
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023460 Ncbp2-001 protein_coding Mus_musculus 0 645
ENSMUST00000126215 Ncbp2-004 processed_transcript Mus_musculus 0 542
ENSMUST00000140965 Ncbp2-003 retained_intron Mus_musculus 0 542
ENSMUST00000118145 Gm12700-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000115178 Ncbp2-002 protein_coding Mus_musculus 1.99965e-42 178

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