C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 2, 20kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428425 NCBP2-005 ENSG00000114503 9606 - 3:196935409-196942594 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000428425
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000428425 12.742±0.00 8.798±0.00 14.071±0.00 14.434±0.00 7.657±0.00 5.814±0.00 2.655±0.00 3.266±1.27 8.475±0.00 6.832±0.00 5.126±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070W CIL_00070W_0002 CGP 3:196867856-196942597

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000339 IEA RNA cap binding
GO:0005846 IEA nuclear cap binding complex
GO:0045292 IEA mRNA cis splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023460 Ncbp2-001 protein_coding Mus_musculus 0 532
ENSMUST00000126215 Ncbp2-004 processed_transcript Mus_musculus 0 429
ENSMUST00000140965 Ncbp2-003 retained_intron Mus_musculus 0 429
ENSMUST00000118145 Gm12700-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000115178 Ncbp2-002 protein_coding Mus_musculus 5e-24 117

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