C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystic fibrosis transmembrane conductance regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115406 Cftr-006 ENSMUSG00000041301 10090 + 6:18170824-18321033 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115406
Transcript ID Adipose Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115406 0.027±0.02 0.060±0.02 0.016±0.00 0.081±0.00 0.030±0.02 0.303±0.02 0.007±0.00 0.734±0.53 0.021±0.01 1.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063R CIL_00063R_0003 CGP 6:18050964-18322768
CIL_0005U6 CIL_0005U6_0003 CGP 6:18170687-18514869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005260 IEA channel-conductance-controlling ATPase activity
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006695 IMP cholesterol biosynthetic process
GO:0006821 IGI chloride transport
GO:0016021 IEA integral component of membrane
GO:0030301 IMP cholesterol transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000003084 CFTR-001 protein_coding Homo_sapiens 0 3029
ENST00000426809 CFTR-005 protein_coding Homo_sapiens 0 3506
ENST00000468795 CFTR-002 protein_coding Homo_sapiens 0 494
ENST00000600166 CFTR-008 protein_coding Homo_sapiens 0 364

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