C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426809 CFTR-005 ENSG00000001626 9606 + 7:117480095-117667071 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLungOvaryENST00000426809
Transcript ID Breast Colon Kidney Lung Ovary
ENST00000426809 0.789±0.00 12.898±0.00 0.892±0.00 2.432±0.00 8.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063R CIL_00063R_0002 CGP 7:117363222-117715971
CIL_0005U6 CIL_0005U6_0002 CGP 7:117465784-117874139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005260 IEA channel-conductance-controlling ATPase activity
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115406 Cftr-006 protein_coding Mus_musculus 0 3506
ENSMUST00000045706 Cftr-001 protein_coding Mus_musculus 0 2996
ENSMUST00000140407 Cftr-005 nonsense_mediated_decay Mus_musculus 0 2091
ENSMUST00000115405 Cftr-004 nonsense_mediated_decay Mus_musculus 0 2091
ENSMUST00000129452 Cftr-002 protein_coding Mus_musculus 0 787

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