C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005U6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041107-ENSDARG00000040991 CGP 7955 18:20457801-20602353
GeneTranscriptPositionBiotype
ENSDARG00000040991 (cttnbp2)
cortactin binding protein 2 		ENSDART00000100743 (cttnbp2-201) 20505981-20602353 protein_coding
ENSDART00000143233 (cttnbp2-001) 20510764-20596814 protein_coding
ENSDARG00000041107 (cftr)
cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7) 		ENSDART00000060243 (cftr-001) 20457801-20503521 protein_coding
ENSDARG00000085222 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000120622 (5S_rRNA.1074-201) 20473522-20473638 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0005U6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000001626-ENSG00000077063 CGP 9606 7:117465784-117874139
GeneTranscriptPositionBiotype
ENSG00000001626 (CFTR)
cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 		ENST00000003084 (CFTR-001) 117479963-117668665 protein_coding
ENST00000426809 (CFTR-005) 117480095-117667071 protein_coding
ENST00000429014 (CFTR-007) 117689713-117715971 processed_transcript
ENST00000446805 (CFTR-004) 117479304-117530978 protein_coding
ENST00000468795 (CFTR-002) 117611617-117627910 protein_coding
ENST00000472848 (CFTR-006) 117559638-117587749 processed_transcript
ENST00000546407 (CFTR-003) 117465784-117504308 processed_transcript
ENST00000600166 (CFTR-008) 117652843-117715948 protein_coding
ENST00000608965 (CFTR-009) 117710017-117715873 processed_transcript
ENST00000610149 (CFTR-010) 117710132-117715827 processed_transcript
ENST00000621535 (CFTR-011) 117713753-117715901 retained_intron
ENSG00000077063 (CTTNBP2)
cortactin binding protein 2 		ENST00000160373 (CTTNBP2-001) 117710651-117873507 protein_coding
ENST00000412853 (CTTNBP2-007) 117810767-117874139 protein_coding
ENST00000416239 (CTTNBP2-004) 117755380-117760593 protein_coding
ENST00000434890 (CTTNBP2-002) 117792586-117871638 protein_coding
ENST00000435233 (CTTNBP2-009) 117735331-117760647 protein_coding
ENST00000441556 (CTTNBP2-012) 117710863-117873429 nonsense_mediated_decay
ENST00000445366 (CTTNBP2-010) 117711628-117728208 nonsense_mediated_decay
ENST00000446636 (CTTNBP2-011) 117710741-117791780 protein_coding
ENST00000454375 (CTTNBP2-006) 117792662-117872220 protein_coding
ENST00000467088 (CTTNBP2-008) 117760268-117767191 retained_intron
ENST00000482124 (CTTNBP2-005) 117755372-117758112 retained_intron
ENST00000487820 (CTTNBP2-003) 117792596-117793605 processed_transcript
ENSG00000083622 (AC000111.6)
 ENST00000456270 (AC000111.6-001) 117604791-117647415 antisense
ENSG00000234001 (AC000111.5)
 ENST00000448200 (AC000111.5-001) 117586207-117586416 processed_pseudogene
ENSG00000237974 (AC000111.4)
 ENST00000433478 (AC000111.4-001) 117487737-117487929 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005U6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041301-ENSMUSG00000000416 CGP 10090 6:18170687-18514869
GeneTranscriptPositionBiotype
ENSMUSG00000000416 (Cttnbp2)
cortactin binding protein 2 		ENSMUST00000090601 (Cttnbp2-003) 18366547-18514869 protein_coding
ENSMUST00000129669 (Cttnbp2-008) 18435251-18513091 protein_coding
ENSMUST00000139557 (Cttnbp2-002) 18431940-18514799 retained_intron
ENSMUST00000140416 (Cttnbp2-006) 18501626-18514843 retained_intron
ENSMUST00000141581 (Cttnbp2-009) 18389145-18408694 protein_coding
ENSMUST00000142963 (Cttnbp2-007) 18448250-18502056 protein_coding
ENSMUST00000146775 (Cttnbp2-004) 18366565-18434451 protein_coding
ENSMUST00000148602 (Cttnbp2-001) 18366707-18514749 nonsense_mediated_decay
ENSMUST00000149570 (Cttnbp2-010) 18367526-18382860 nonsense_mediated_decay
ENSMUST00000152499 (Cttnbp2-005) 18366478-18428231 retained_intron
ENSMUSG00000041301 (Cftr)
cystic fibrosis transmembrane conductance regulator 		ENSMUST00000045706 (Cftr-001) 18170687-18322768 protein_coding
ENSMUST00000115405 (Cftr-004) 18170687-18322767 nonsense_mediated_decay
ENSMUST00000115406 (Cftr-006) 18170824-18321033 protein_coding
ENSMUST00000129452 (Cftr-002) 18170771-18236655 protein_coding
ENSMUST00000140407 (Cftr-005) 18170687-18322767 nonsense_mediated_decay
ENSMUST00000140532 (Cftr-003) 18255224-18268130 retained_intron
ENSMUSG00000080767 (Gm15595)
predicted gene 15595 		ENSMUST00000120840 (Gm15595-001) 18294271-18295231 processed_pseudogene
ENSMUSG00000084947 (Gm15594)
predicted gene 15594 		ENSMUST00000137958 (Gm15594-001) 18424684-18427885 antisense
ENSMUSG00000087389 (Gm15592)
predicted gene 15592 		ENSMUST00000143135 (Gm15592-001) 18270136-18289048 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005U6_0001ENSDARG00000040991ENSDART00000100743ENSDART00000143233ENSDARG00000041107ENSDART00000060243ENSDARG00000085222ENSDART00000120622CIL_0005U6_0002ENSG00000001626ENST00000003084ENST00000426809ENST00000429014ENST00000446805ENST00000468795ENST00000472848ENST00000546407ENST00000600166ENST00000608965ENST00000610149ENST00000621535ENSG00000077063ENST00000160373ENST00000412853ENST00000416239ENST00000434890ENST00000435233ENST00000441556ENST00000445366ENST00000446636ENST00000454375ENST00000467088ENST00000482124ENST00000487820ENSG00000083622ENST00000456270ENSG00000234001ENST00000448200ENSG00000237974ENST00000433478CIL_0005U6_0003ENSMUSG00000000416ENSMUST00000090601ENSMUST00000129669ENSMUST00000139557ENSMUST00000140416ENSMUST00000141581ENSMUST00000142963ENSMUST00000146775ENSMUST00000148602ENSMUST00000149570ENSMUST00000152499ENSMUSG00000041301ENSMUST00000045706ENSMUST00000115405ENSMUST00000115406ENSMUST00000129452ENSMUST00000140407ENSMUST00000140532ENSMUSG00000080767ENSMUST00000120840ENSMUSG00000084947ENSMUST00000137958ENSMUSG00000087389ENSMUST00000143135
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005U6_0001ENSDARG00000040991ENSDART00000100743ENSDARG00000041107ENSDART00000060243ENSDARG00000085222ENSDART00000120622CIL_0005U6_0002ENSG00000001626ENST00000003084ENST00000426809ENSG00000077063ENST00000160373ENST00000441556ENST00000446636ENSG00000083622ENST00000456270ENSG00000234001ENST00000448200ENSG00000237974ENST00000433478CIL_0005U6_0003ENSMUSG00000000416ENSMUST00000090601ENSMUST00000139557ENSMUST00000140416ENSMUST00000141581ENSMUST00000146775ENSMUST00000148602ENSMUST00000149570ENSMUST00000152499ENSMUSG00000041301ENSMUST00000045706ENSMUST00000115405ENSMUST00000115406ENSMUST00000129452ENSMUSG00000080767ENSMUST00000120840ENSMUSG00000084947ENSMUST00000137958ENSMUSG00000087389ENSMUST00000143135
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040991 ENSDART00000100743 N/A N/A N/A 16.557±0.00 N/A N/A 3.381±1.43 1.114±0.57 N/A N/A 3.295±0.00 N/A N/A N/A
ENSDART00000143233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000041107 ENSDART00000060243 N/A N/A N/A 0.071±0.01 N/A N/A 0.165±0.17 0.663±0.00 N/A N/A 0.075±0.00 N/A N/A N/A
ENSDARG00000085222 ENSDART00000120622 N/A N/A N/A 8.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000001626 ENST00000003084 N/A N/A N/A N/A 0.735±0.00 6.627±4.56 0.031±0.00 N/A N/A 1.562±0.40 N/A 7.786±6.54 0.065±0.00 N/A
ENST00000426809 N/A N/A N/A N/A 0.789±0.00 12.898±0.00 N/A 0.892±0.00 N/A 2.432±0.00 N/A 8.171±0.00 N/A N/A
ENST00000429014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000077063 ENST00000160373 N/A 0.563±0.00 N/A 1.082±0.45 N/A N/A 0.162±0.00 0.497±0.00 0.142±0.00 0.510±0.10 N/A N/A 0.174±0.04 0.169±0.00
ENST00000412853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441556 0.342±0.00 N/A N/A 1.439±0.98 0.328±0.00 N/A 0.233±0.00 0.604±0.00 1.225±0.00 N/A N/A N/A 0.203±0.02 0.524±0.00
ENST00000445366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446636 N/A N/A 0.495±0.00 N/A 0.211±0.00 N/A N/A 1.400±0.00 N/A N/A 0.098±0.00 N/A 0.070±0.00 N/A
ENST00000454375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000083622 ENST00000456270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.816±0.18 N/A 0.072±0.00
ENSG00000234001 ENST00000448200 N/A N/A N/A N/A N/A 2.375±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237974 ENST00000433478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.517±0.00 N/A 0.343±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000416 ENSMUST00000090601 0.975±0.76 5.935±1.15 0.548±0.18 3.012±0.08 0.393±0.06 1.625±0.30 0.142±0.01 1.569±0.26 0.128±0.08 1.607±0.12 0.022±0.00 0.786±0.29 0.154±0.06 0.265±0.15
ENSMUST00000129669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139557 0.658±0.06 2.307±0.24 N/A 3.359±0.56 0.147±0.00 0.512±0.04 0.096±0.00 0.806±0.22 0.057±0.00 0.728±0.11 0.031±0.01 0.401±0.17 0.063±0.02 0.361±0.00
ENSMUST00000140416 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141581 N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A
ENSMUST00000142963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146775 N/A N/A 0.419±0.03 8.009±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.04 0.858±0.31 0.144±0.06 0.158±0.00
ENSMUST00000148602 0.348±0.00 N/A 0.282±0.00 7.750±2.26 0.110±0.00 N/A 0.108±0.00 N/A 0.050±0.04 N/A 0.064±0.04 0.504±0.20 0.098±0.06 0.411±0.16
ENSMUST00000149570 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.048±0.00 N/A N/A
ENSMUST00000152499 0.059±0.00 N/A N/A 2.894±0.48 N/A N/A N/A 0.518±0.00 0.043±0.02 N/A N/A 0.476±0.00 0.112±0.05 N/A
ENSMUSG00000041301 ENSMUST00000045706 1.500±0.08 0.049±0.00 N/A 0.046±0.02 N/A 4.433±0.55 0.029±0.01 0.284±0.20 0.019±0.01 1.222±0.26 N/A 1.690±0.85 0.027±0.01 1.922±1.00
ENSMUST00000115405 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.586±0.00
ENSMUST00000115406 0.027±0.02 N/A N/A 0.060±0.02 N/A N/A 0.016±0.00 0.081±0.00 0.030±0.02 0.303±0.02 0.007±0.00 0.734±0.53 0.021±0.01 1.628±0.00
ENSMUST00000129452 N/A 0.103±0.00 N/A N/A 0.065±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080767 ENSMUST00000120840 0.044±0.00 N/A N/A N/A N/A 0.182±0.11 N/A N/A 0.006±0.00 0.044±0.01 N/A 0.137±0.06 N/A 0.115±0.07
ENSMUSG00000084947 ENSMUST00000137958 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A 0.083±0.00 0.233±0.00
ENSMUSG00000087389 ENSMUST00000143135 0.022±0.00 N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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