C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115475 Foxp2-015 ENSMUSG00000029563 10090 + 6:15376689-15439048 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalLiverMusclePlacentaTestisENSMUST00000115475
Transcript ID Adipose Adrenal Liver Muscle Placenta Testis
ENSMUST00000115475 0.068±0.02 0.500±0.00 0.363±0.00 0.060±0.00 0.001±0.00 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084L CIL_00084L_0002 VISTA 6:14454338-15055302
CIL_00090T CIL_00090T_0002 VISTA 6:14680242-15281244
CIL_000412 CIL_000412_0002 CGP 6:14713822-15441977
CIL_00095R CIL_00095R_0002 VISTA 6:14882427-15483744
CIL_0007XX CIL_0007XX_0002 VISTA 6:14885821-15487224
CIL_00092C CIL_00092C_0002 VISTA 6:14887323-15489118
CIL_00092B CIL_00092B_0002 VISTA 6:14892947-15494270
CIL_00082W CIL_00082W_0002 VISTA 6:14901156-15503663
CIL_000411 CIL_000411_0002 CGP 6:14901349-15802169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0007519 IGI skeletal muscle tissue development
GO:0009791 IMP post-embryonic development
GO:0021549 IMP cerebellum development
GO:0030324 IGI lung development
GO:0040007 IMP growth
GO:0042297 IMP vocal learning
GO:0042803 IPI protein homodimerization activity
GO:0043010 IMP camera-type eye development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046982 IPI protein heterodimerization activity
GO:0048286 IMP lung alveolus development
GO:0048745 IGI smooth muscle tissue development
GO:0050679 IGI positive regulation of epithelial cell proliferation
GO:0060013 IMP righting reflex
GO:0060501 IGI positive regulation of epithelial cell proliferation involved in lung morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060861 foxp2-201 protein_coding Danio_rerio 0 455
ENSDART00000134820 foxp2-008 protein_coding Danio_rerio 0 455
ENSDART00000142087 foxp2-007 protein_coding Danio_rerio 0 455
ENSDART00000136572 foxp2-005 processed_transcript Danio_rerio 0 324
ENSDART00000114288 foxp4-201 protein_coding Danio_rerio 0.00000002 66
ENSDART00000122918 foxp4-202 protein_coding Danio_rerio 0.00000003 66
ENST00000318789 FOXP1-001 protein_coding Homo_sapiens 0 231
ENST00000327590 FOXP1-003 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000350908 FOXP2-001 protein_coding Homo_sapiens 0 1286
ENST00000360232 FOXP2-017 protein_coding Homo_sapiens 0 1216
ENST00000378237 FOXP2-010 protein_coding Homo_sapiens 0 944
ENST00000390668 FOXP2-016 protein_coding Homo_sapiens 0 1216
ENST00000393489 FOXP2-020 protein_coding Homo_sapiens 0 1216
ENST00000393491 FOXP2-201 protein_coding Homo_sapiens 0 1323
ENST00000393494 FOXP2-014 protein_coding Homo_sapiens 0 1327
ENST00000393495 FOXP2-018 protein_coding Homo_sapiens 0 472
ENST00000393498 FOXP2-005 protein_coding Homo_sapiens 0 1327
ENST00000403559 FOXP2-202 protein_coding Homo_sapiens 0 1404
ENST00000408937 FOXP2-004 protein_coding Homo_sapiens 0 1327
ENST00000412402 FOXP2-006 nonsense_mediated_decay Homo_sapiens 0 2728
ENST00000440349 FOXP2-002 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000441290 FOXP2-008 nonsense_mediated_decay Homo_sapiens 0 1406
ENST00000452963 FOXP2-015 protein_coding Homo_sapiens 0 278
ENST00000475937 FOXP1-004 protein_coding Homo_sapiens 0 231
ENST00000484350 FOXP1-005 protein_coding Homo_sapiens 0 231
ENST00000491238 FOXP1-011 protein_coding Homo_sapiens 0 231
ENST00000493089 FOXP1-002 protein_coding Homo_sapiens 0 231
ENST00000497355 FOXP1-009 protein_coding Homo_sapiens 0 231
ENST00000498215 FOXP1-006 protein_coding Homo_sapiens 0 231
ENST00000614176 FOXP1-201 protein_coding Homo_sapiens 0 231
ENST00000614183 FOXP1-025 processed_transcript Homo_sapiens 0 231

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