C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: armadillo repeat gene deleted in velo-cardio-facial syndrome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115610 Arvcf-005 ENSMUSG00000000325 10090 + 16:18392589-18406256 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLungMuscleOvaryPlacentaTestisENSMUST00000115610
Transcript ID Adrenal Brain Colon Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000115610 19.677±2.63 23.638±0.08 6.562±1.15 35.272±2.87 18.512±2.11 2.719±0.34 11.426±2.60 8.756±3.91 1.413±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0016337 IEA single organismal cell-cell adhesion
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263207 ARVCF-001 protein_coding Homo_sapiens 0 2708
ENST00000401994 ARVCF-011 protein_coding Homo_sapiens 0 2717
ENST00000406259 ARVCF-013 protein_coding Homo_sapiens 0 2756
ENST00000406522 ARVCF-012 protein_coding Homo_sapiens 0 2789
ENST00000480792 ARVCF-009 processed_transcript Homo_sapiens 0 514
ENST00000487793 ARVCF-005 processed_transcript Homo_sapiens 0 717
ENST00000495096 ARVCF-002 retained_intron Homo_sapiens 0 1406

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