C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear distribution gene E homolog 1 (A nidulans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115795 Nde1-008 ENSMUSG00000022678 10090 + 16:14163345-14192918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115795 3.408±0.09 5.112±1.43 4.353±0.00 4.152±0.00 4.208±1.72 4.692±1.24 2.710±0.00 2.071±0.65 4.347±2.64 6.415±0.37 3.925±0.97 5.487±1.49 5.394±1.51 1.517±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UO CIL_0006UO_0002 CGP 16:14109166-14192928
CIL_0006MU CIL_0006MU_0002 CGP 16:14163275-14291408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0005819 IDA spindle
GO:0005874 IEA microtubule
GO:0007020 IDA microtubule nucleation
GO:0007067 IEA mitotic nuclear division
GO:0007405 IMP neuroblast proliferation
GO:0008017 IMP microtubule binding
GO:0021987 IGI cerebral cortex development
GO:0030900 IMP forebrain development
GO:0031023 IMP microtubule organizing center organization
GO:0031616 IDA spindle pole centrosome
GO:0042802 IPI identical protein binding
GO:0047496 IGI vesicle transport along microtubule
GO:0051298 IMP centrosome duplication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342673 NDE1-201 protein_coding Homo_sapiens 0 950
ENST00000396354 NDE1-001 protein_coding Homo_sapiens 0 961
ENST00000396355 NDE1-002 protein_coding Homo_sapiens 0 950
ENST00000570727 NDE1-004 protein_coding Homo_sapiens 0 468
ENST00000572756 NDE1-005 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000573203 NDE1-003 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000574109 NDE1-008 protein_coding Homo_sapiens 0 538
ENST00000574163 NDE1-006 retained_intron Homo_sapiens 0 298
ENST00000619489 NDE1-201 protein_coding Homo_sapiens 0 950

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