C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006MU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072864-ENSG00000133392 CGP 9606 16:15643267-15857033
GeneTranscriptPositionBiotype
ENSG00000072864 (NDE1)
nudE neurodevelopment protein 1 		ENST00000342673 (NDE1-201) 15664723-15726353 protein_coding
ENST00000396354 (NDE1-001) 15650227-15726353 protein_coding
ENST00000396355 (NDE1-002) 15643267-15726353 protein_coding
ENST00000570727 (NDE1-004) 15650247-15677944 protein_coding
ENST00000571896 (NDE1-015) 15721637-15725134 processed_transcript
ENST00000572503 (NDE1-011) 15721493-15724291 processed_transcript
ENST00000572756 (NDE1-005) 15650247-15691324 nonsense_mediated_decay
ENST00000572967 (NDE1-013) 15691242-15724222 protein_coding
ENST00000573203 (NDE1-003) 15650257-15691219 nonsense_mediated_decay
ENST00000573694 (NDE1-014) 15691163-15724222 protein_coding
ENST00000574109 (NDE1-008) 15687427-15699930 protein_coding
ENST00000574163 (NDE1-006) 15672663-15687468 retained_intron
ENST00000576502 (NDE1-009) 15691200-15700491 protein_coding
ENST00000577101 (NDE1-007) 15677925-15696766 protein_coding
ENSG00000133392 (MYH11)
myosin, heavy chain 11, smooth muscle 		ENST00000300036 (MYH11-001) 15703991-15857033 protein_coding
ENST00000396324 (MYH11-006) 15703172-15857011 protein_coding
ENST00000452625 (MYH11-013) 15703172-15857011 protein_coding
ENST00000570785 (MYH11-011) 15749168-15783532 retained_intron
ENST00000571275 (MYH11-008) 15712896-15725138 retained_intron
ENST00000571505 (MYH11-004) 15785015-15857028 retained_intron
ENST00000571910 (MYH11-014) 15775842-15779423 retained_intron
ENST00000573908 (MYH11-012) 15703741-15711270 processed_transcript
ENST00000574119 (MYH11-015) 15741553-15742191 retained_intron
ENST00000576164 (MYH11-009) 15712890-15724328 retained_intron
ENST00000576790 (MYH11-003) 15703787-15857033 protein_coding
ENST00000611087 (MYH11-201) 15703135-15857030 protein_coding
ENST00000616439 (MYH11-202) 15703135-15857030 protein_coding
ENSG00000262380 (CTB-193M12.3)
 ENST00000576454 (CTB-193M12.3-001) 15683290-15684570 sense_intronic
ENSG00000279866 (CTB-193M12.4)
 ENST00000624838 (CTB-193M12.4-001) 15704410-15705984 TEC
ENSG00000280206 (CTB-193M12.5)
 ENST00000624682 (CTB-193M12.5-001) 15701237-15702118 TEC
ENSG00000280429 (AF001548.3)
 ENST00000624545 (AF001548.3-001) 15790975-15792717 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0006MU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022678-ENSMUSG00000018830 CGP 10090 16:14163275-14291408
GeneTranscriptPositionBiotype
ENSMUSG00000018830 (Myh11)
myosin, heavy polypeptide 11, smooth muscle 		ENSMUST00000090287 (Myh11-201) 14194527-14291408 protein_coding
ENSMUSG00000022678 (Nde1)
nuclear distribution gene E homolog 1 (A nidulans) 		ENSMUST00000023359 (Nde1-001) 14163275-14192928 protein_coding
ENSMUST00000115795 (Nde1-008) 14163345-14192918 protein_coding
ENSMUST00000117958 (Nde1-006) 14163287-14192828 protein_coding
ENSMUST00000127801 (Nde1-007) 14163349-14190440 processed_transcript
ENSMUST00000132316 (Nde1-002) 14163298-14192918 nonsense_mediated_decay
ENSMUST00000133249 (Nde1-003) 14163304-14170829 retained_intron
ENSMUST00000149232 (Nde1-005) 14183573-14190520 protein_coding
ENSMUST00000156041 (Nde1-004) 14175127-14188397 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MU_0001ENSG00000072864ENST00000342673ENST00000396354ENST00000396355ENST00000570727ENST00000571896ENST00000572503ENST00000572756ENST00000572967ENST00000573203ENST00000573694ENST00000574109ENST00000574163ENST00000576502ENST00000577101ENSG00000133392ENST00000300036ENST00000396324ENST00000452625ENST00000570785ENST00000571275ENST00000571505ENST00000571910ENST00000573908ENST00000574119ENST00000576164ENST00000576790ENST00000611087ENST00000616439ENSG00000262380ENST00000576454ENSG00000279866ENST00000624838ENSG00000280206ENST00000624682ENSG00000280429ENST00000624545CIL_0006MU_0002ENSMUSG00000018830ENSMUST00000090287ENSMUSG00000022678ENSMUST00000023359ENSMUST00000115795ENSMUST00000117958ENSMUST00000127801ENSMUST00000132316ENSMUST00000133249ENSMUST00000149232ENSMUST00000156041
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MU_0001ENSG00000072864ENST00000342673ENSG00000133392ENST00000300036ENST00000396324ENST00000452625ENST00000576790ENST00000616439ENSG00000262380ENST00000576454ENSG00000279866ENST00000624838ENSG00000280206ENST00000624682ENSG00000280429ENST00000624545CIL_0006MU_0002ENSMUSG00000018830ENSMUST00000090287ENSMUSG00000022678ENSMUST00000023359ENSMUST00000115795ENSMUST00000117958ENSMUST00000132316ENSMUST00000149232ENSMUST00000156041
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072864 ENST00000342673 N/A N/A N/A 0.838±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133392 ENST00000300036 N/A N/A 1.439±0.00 0.533±0.00 N/A 48.913±0.00 0.607±0.00 0.303±0.00 422.032±0.00 N/A 1.860±0.00 6.525±1.55 10.962±0.93 16.841±0.00
ENST00000396324 66.229±0.00 N/A N/A 5.497±0.00 25.745±7.25 N/A 3.930±3.22 25.415±0.00 N/A 86.284±0.00 15.913±0.00 139.053±0.00 35.178±23.47 33.246±0.00
ENST00000452625 N/A N/A N/A N/A N/A 659.686±0.00 4.195±0.00 0.561±0.00 53.122±51.63 N/A 31.201±0.00 5.664±0.00 N/A N/A
ENST00000570785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576790 44.928±0.00 135.739±0.00 3.918±0.00 8.307±0.00 13.449±0.00 614.828±0.00 5.446±4.81 N/A 144.847±0.00 3.857±0.00 14.675±0.00 55.221±0.00 N/A N/A
ENST00000611087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616439 N/A N/A N/A N/A 21.875±0.00 N/A 0.624±0.00 18.494±0.00 89.989±0.00 99.239±0.00 N/A 63.017±18.90 22.890±10.08 797.880±0.00
ENSG00000262380 ENST00000576454 0.086±0.00 N/A N/A 0.527±0.00 0.478±0.25 0.132±0.00 0.055±0.00 0.350±0.00 0.240±0.01 0.343±0.21 N/A 0.113±0.01 N/A 0.124±0.01
ENSG00000279866 ENST00000624838 0.242±0.00 1.542±0.00 0.170±0.00 0.327±0.02 0.634±0.13 1.499±0.69 0.126±0.04 0.181±0.05 0.251±0.22 0.277±0.11 0.009±0.00 0.513±0.19 0.051±0.02 0.650±0.00
ENSG00000280206 ENST00000624682 2.564±0.00 2.441±0.00 0.290±0.00 0.976±0.36 1.972±0.35 3.397±2.53 0.725±0.00 0.710±0.60 0.946±0.62 2.212±1.20 0.399±0.26 1.910±0.91 2.021±0.95 4.493±3.20
ENSG00000280429 ENST00000624545 0.388±0.00 1.213±0.00 N/A 0.152±0.00 0.838±0.02 3.136±2.37 0.063±0.00 0.112±0.09 2.680±2.66 0.105±0.05 0.026±0.00 0.318±0.26 0.095±0.05 0.692±0.25
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018830 ENSMUST00000090287 28.263±22.50 0.580±0.18 495.377±0.00 2.063±2.76 3.075±1.44 73.638±19.05 4.341±2.29 2.781±1.91 0.333±0.14 13.582±4.88 2.251±0.86 28.587±18.90 10.650±19.95 8.059±6.10
ENSMUSG00000022678 ENSMUST00000023359 6.125±2.66 2.334±0.00 15.241±0.00 8.317±4.55 3.662±0.00 N/A 6.882±1.72 4.021±1.32 13.719±11.91 7.747±3.29 4.690±0.55 11.988±5.38 13.877±6.30 2.603±1.12
ENSMUST00000115795 3.408±0.09 5.112±1.43 4.353±0.00 4.152±0.00 4.208±1.72 4.692±1.24 2.710±0.00 2.071±0.65 4.347±2.64 6.415±0.37 3.925±0.97 5.487±1.49 5.394±1.51 1.517±0.37
ENSMUST00000117958 N/A N/A N/A 6.213±0.00 N/A N/A 2.461±0.00 N/A N/A N/A 2.336±0.22 41.257±0.00 19.067±17.43 1.818±0.00
ENSMUST00000127801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132316 9.018±2.05 5.007±1.60 N/A N/A 7.177±2.62 5.769±1.84 N/A 3.841±1.59 2.385±0.90 8.990±1.09 1.457±0.00 9.092±4.01 4.500±0.00 1.615±0.01
ENSMUST00000133249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149232 10.893±0.00 11.527±2.05 N/A N/A 7.380±2.33 6.281±0.80 N/A N/A 4.477±0.26 N/A N/A 16.776±4.75 N/A N/A
ENSMUST00000156041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.009±0.00 N/A N/A

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