C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REST corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116388 Rcor1-201 ENSMUSG00000037896 10090 + 12:111039798-111113384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000116388
Transcript ID Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116388 2.390±0.32 1.144±0.21 1.114±0.00 2.221±0.25 0.667±0.00 7.840±5.60 21.529±7.35 3.798±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0002 VISTA 12:110842738-111443613
CIL_00040S CIL_00040S_0002 CGP 12:110975353-111115901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0017053 IEA transcriptional repressor complex
GO:0030218 IMP erythrocyte differentiation
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045654 IMP positive regulation of megakaryocyte differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0070933 IEA histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262241 RCOR1-001 protein_coding Homo_sapiens 0 2230
ENST00000560472 RCOR1-003 nonsense_mediated_decay Homo_sapiens 0 383

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