C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156381-ENSG00000089902 CGP 9606 14:102501760-102730576
GeneTranscriptPositionBiotype
ENSG00000089902 (RCOR1)
REST corepressor 1 		ENST00000262241 (RCOR1-001) 102592661-102730576 protein_coding
ENST00000558495 (RCOR1-002) 102710742-102714452 retained_intron
ENST00000559597 (RCOR1-004) 102720926-102721551 retained_intron
ENST00000560472 (RCOR1-003) 102721022-102726585 nonsense_mediated_decay
ENSG00000156381 (ANKRD9)
ankyrin repeat domain 9 		ENST00000286918 (ANKRD9-001) 102501760-102509791 protein_coding
ENST00000557902 (ANKRD9-005) 102507574-102508911 protein_coding
ENST00000559404 (ANKRD9-004) 102507111-102509235 protein_coding
ENST00000559651 (ANKRD9-003) 102506842-102508817 protein_coding
ENST00000560748 (ANKRD9-002) 102506876-102509799 protein_coding
ENSG00000196663 (TECPR2)
tectonin beta-propeller repeat containing 2 		ENST00000359520 (TECPR2-001) 102362963-102502481 protein_coding
ENST00000557786 (TECPR2-005) 102438277-102445833 processed_transcript
ENST00000558678 (TECPR2-003) 102363079-102465671 protein_coding
ENST00000559124 (TECPR2-007) 102497539-102498412 retained_intron
ENST00000560060 (TECPR2-004) 102434839-102443682 processed_transcript
ENST00000561099 (TECPR2-006) 102496881-102498224 retained_intron
ENST00000561228 (TECPR2-002) 102363061-102425272 processed_transcript
ENSG00000230988 (RP11-661D19.1)
 ENST00000475260 (RP11-661D19.1-001) 102662240-102662708 processed_pseudogene
ENSG00000239224 (RN7SL546P)
RNA, 7SL, cytoplasmic 546, pseudogene 		ENST00000479428 (RN7SL546P-201) 102582888-102583177 misc_RNA
ENSG00000259230 (CTD-2555C10.3)
 ENST00000559946 (CTD-2555C10.3-001) 102545254-102555826 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00040S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037904-ENSMUSG00000037896 CGP 10090 12:110975353-111115901
GeneTranscriptPositionBiotype
ENSMUSG00000037896 (Rcor1)
REST corepressor 1 		ENSMUST00000084968 (Rcor1-001) 111039351-111115901 protein_coding
ENSMUST00000116388 (Rcor1-201) 111039798-111113384 protein_coding
ENSMUSG00000037904 (Ankrd9)
ankyrin repeat domain 9 		ENSMUST00000043459 (Ankrd9-001) 110976427-110979021 protein_coding
ENSMUST00000128353 (Ankrd9-003) 110975353-110979040 protein_coding
ENSMUST00000135131 (Ankrd9-002) 110976429-110978995 protein_coding
ENSMUST00000140788 (Ankrd9-005) 110976427-110978618 protein_coding
ENSMUST00000142012 (Ankrd9-004) 110976427-110978943 protein_coding
ENSMUST00000144882 (Ankrd9-007) 110977972-110978579 processed_transcript
ENSMUST00000148765 (Ankrd9-006) 110976426-110978255 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040S_0001ENSG00000089902ENST00000262241ENST00000558495ENST00000559597ENST00000560472ENSG00000156381ENST00000286918ENST00000557902ENST00000559404ENST00000559651ENST00000560748ENSG00000196663ENST00000359520ENST00000557786ENST00000558678ENST00000559124ENST00000560060ENST00000561099ENST00000561228ENSG00000230988ENST00000475260ENSG00000239224ENST00000479428ENSG00000259230ENST00000559946CIL_00040S_0002ENSMUSG00000037896ENSMUST00000084968ENSMUST00000116388ENSMUSG00000037904ENSMUST00000043459ENSMUST00000128353ENSMUST00000135131ENSMUST00000140788ENSMUST00000142012ENSMUST00000144882ENSMUST00000148765
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040S_0001ENSG00000089902ENST00000262241ENST00000560472ENSG00000156381ENST00000286918ENST00000559404ENST00000559651ENST00000560748ENSG00000196663ENST00000359520ENST00000558678ENST00000561228ENSG00000230988ENST00000475260ENSG00000239224ENST00000479428ENSG00000259230ENST00000559946CIL_00040S_0002ENSMUSG00000037896ENSMUST00000084968ENSMUST00000116388ENSMUSG00000037904ENSMUST00000043459ENSMUST00000128353ENSMUST00000135131ENSMUST00000140788ENSMUST00000142012ENSMUST00000148765
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089902 ENST00000262241 4.670±0.00 3.055±0.00 1.089±0.00 1.483±1.03 2.744±0.19 2.693±0.98 1.652±1.16 3.135±1.13 1.724±0.31 3.534±0.81 2.703±1.33 3.215±1.96 8.808±1.76 8.442±0.62
ENST00000558495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560472 N/A N/A 2.799±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156381 ENST00000286918 1.061±0.00 N/A N/A 1.147±0.00 2.084±0.00 0.966±0.00 6.487±0.00 1.063±0.85 0.410±0.00 0.612±0.00 3.601±0.72 0.496±0.00 1.676±0.00 1.785±0.00
ENST00000557902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559404 N/A N/A N/A N/A N/A N/A 2.966±0.00 N/A N/A 11.754±0.00 18.530±0.00 5.096±0.00 N/A N/A
ENST00000559651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.768±0.00 9.227±0.00 10.831±0.00 33.310±0.00
ENST00000560748 N/A N/A N/A N/A N/A N/A 91.615±0.00 N/A 10.022±0.00 22.666±0.00 50.113±0.00 N/A N/A N/A
ENSG00000196663 ENST00000359520 1.698±0.00 1.050±0.00 0.434±0.00 2.379±1.42 1.387±1.17 0.446±0.00 1.404±1.09 1.237±1.00 0.820±0.00 1.030±0.68 3.449±0.00 2.582±1.77 2.662±1.06 4.581±1.68
ENST00000557786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558678 1.744±0.00 1.661±0.00 0.326±0.00 2.117±1.21 N/A N/A 0.538±0.00 N/A 1.266±0.00 0.520±0.00 N/A 0.633±0.00 2.548±0.00 6.543±3.89
ENST00000559124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561228 N/A N/A 2.285±0.00 4.953±0.00 2.286±0.00 3.330±0.00 N/A 1.326±0.00 N/A 2.127±0.00 N/A 2.736±0.00 N/A N/A
ENSG00000230988 ENST00000475260 N/A N/A N/A N/A N/A N/A 0.038±0.00 0.043±0.00 N/A 0.084±0.00 0.037±0.00 0.510±0.45 N/A N/A
ENSG00000239224 ENST00000479428 0.148±0.00 0.540±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.07 N/A 0.388±0.20
ENSG00000259230 ENST00000559946 N/A 0.044±0.00 N/A 0.029±0.00 N/A 0.044±0.00 N/A N/A N/A 0.068±0.00 N/A 0.321±0.16 0.209±0.08 0.269±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037896 ENSMUST00000084968 0.891±0.16 2.254±1.79 2.439±0.13 2.651±2.15 0.690±0.04 4.313±2.34 2.091±1.21 2.287±2.14 5.623±4.15 8.282±0.00 1.656±0.47 3.245±3.03 12.637±4.15 1.570±0.69
ENSMUST00000116388 N/A N/A N/A 2.390±0.32 N/A N/A 1.144±0.21 N/A 1.114±0.00 2.221±0.25 0.667±0.00 7.840±5.60 21.529±7.35 3.798±0.73
ENSMUSG00000037904 ENSMUST00000043459 1.388±0.00 7.865±2.70 3.142±1.32 1.165±0.59 1.383±1.03 7.514±2.05 5.321±0.60 1.253±0.17 10.200±7.17 0.986±0.00 22.571±3.30 1.878±0.54 0.854±0.10 N/A
ENSMUST00000128353 0.572±0.00 N/A N/A 0.213±0.00 N/A 3.949±0.32 N/A 0.797±0.00 0.293±0.00 N/A N/A 1.192±0.20 0.324±0.03 N/A
ENSMUST00000135131 2.223±0.00 6.281±0.38 5.125±0.99 1.760±1.24 3.589±0.00 8.700±1.72 9.471±0.92 2.828±0.65 6.776±5.54 N/A 43.233±8.10 2.128±1.12 1.098±0.68 29.280±12.90
ENSMUST00000140788 1.148±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.423±0.00
ENSMUST00000142012 3.786±1.35 4.748±0.00 2.880±0.00 0.994±0.38 17.618±0.08 N/A 11.483±3.12 4.018±1.40 11.982±5.85 2.879±0.97 N/A 4.678±1.64 0.920±0.22 22.517±1.01
ENSMUST00000144882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148765 1.873±0.82 12.552±3.17 4.105±0.00 N/A 5.906±1.42 15.301±2.43 5.680±0.42 4.015±1.76 3.763±2.93 4.995±0.40 N/A 5.995±2.52 1.861±0.75 12.109±0.00

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