C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRM5 tRNA methyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116420 Trmt5-201 ENSMUSG00000034442 10090 - 12:73280410-73286711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116420 4.494±1.23 2.801±0.91 5.916±0.90 5.919±1.42 3.897±1.16 2.064±0.24 9.182±1.64 2.494±0.72 4.021±2.63 2.823±0.59 1.912±0.44 4.990±1.51 9.241±3.94 5.715±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_0006SK CIL_0006SK_0003 CGP 12:73123717-73286711
CIL_00035S CIL_00035S_0003 CGP 12:73280410-73354049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005759 IEA mitochondrial matrix
GO:0008150 ND biological_process
GO:0030488 IEA tRNA methylation
GO:0052906 IEA tRNA (guanine(37)-N(1))-methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261249 TRMT5-001 protein_coding Homo_sapiens 0 1282

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