C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002077-ENSDARG00000069278 CGP 7955 13:31871873-31911527
GeneTranscriptPositionBiotype
ENSDARG00000002077 (mnat1)
menage a trois homolog 1 		ENSDART00000006648 (mnat1-001) 31871873-31905553 protein_coding
ENSDARG00000069278 (trmt5)
TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) 		ENSDART00000085989 (trmt5-001) 31905590-31911527 protein_coding
CIL_0006SK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000020426-ENSG00000126814 CGP 9606 14:60734742-60981358
GeneTranscriptPositionBiotype
ENSG00000126814 (TRMT5)
tRNA methyltransferase 5 		ENST00000261249 (TRMT5-001) 60971451-60981358 protein_coding
ENST00000553903 (TRMT5-002) 60979474-60981170 protein_coding
ENST00000555420 (TRMT5-003) 60979523-60981051 protein_coding
ENSG00000139974 (SLC38A6)
solute carrier family 38, member 6 		ENST00000267488 (SLC38A6-001) 60981162-61052630 protein_coding
ENST00000354886 (SLC38A6-201) 60981114-61083712 protein_coding
ENST00000451406 (SLC38A6-003) 60981293-61083729 protein_coding
ENST00000491344 (SLC38A6-004) 60981277-61083729 nonsense_mediated_decay
ENST00000524402 (SLC38A6-010) 60982196-61037683 nonsense_mediated_decay
ENST00000525585 (SLC38A6-007) 60982544-60987590 retained_intron
ENST00000525723 (SLC38A6-002) 60981226-61083733 nonsense_mediated_decay
ENST00000526105 (SLC38A6-011) 60982365-61037118 protein_coding
ENST00000526539 (SLC38A6-015) 61046107-61083633 nonsense_mediated_decay
ENST00000527591 (SLC38A6-005) 60981437-61052445 nonsense_mediated_decay
ENST00000528350 (SLC38A6-012) 60982557-61043208 nonsense_mediated_decay
ENST00000529212 (SLC38A6-014) 61043150-61052461 protein_coding
ENST00000529345 (SLC38A6-006) 60981444-61083732 nonsense_mediated_decay
ENST00000532148 (SLC38A6-009) 60981237-61002236 processed_transcript
ENST00000533744 (SLC38A6-013) 60982557-61046072 protein_coding
ENST00000534758 (SLC38A6-008) 61019536-61031039 protein_coding
ENST00000554072 (SLC38A6-016) 60984764-61034299 retained_intron
ENST00000554304 (SLC38A6-019) 60981233-61004637 processed_transcript
ENST00000554498 (SLC38A6-018) 61051886-61052464 retained_intron
ENST00000556938 (SLC38A6-017) 61051815-61052459 retained_intron
ENSG00000258445 (RP11-307P22.1)
 ENST00000556153 (RP11-307P22.1-001) 60779978-60780595 processed_pseudogene
ENSG00000258485 (SRMP2)
spermidine synthase pseudogene 2 		ENST00000553832 (SRMP2-001) 60919240-60920155 processed_pseudogene
CIL_0006SK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021103-ENSMUSG00000034442 CGP 10090 12:73123717-73286711
GeneTranscriptPositionBiotype
ENSMUSG00000021103 (Mnat1)
menage a trois 1 		ENSMUST00000021523 (Mnat1-001) 73123717-73273988 protein_coding
ENSMUST00000187549 (Mnat1-002) 73123717-73233548 protein_coding
ENSMUST00000189644 (Mnat1-003) 73123717-73272851 nonsense_mediated_decay
ENSMUSG00000034442 (Trmt5)
TRM5 tRNA methyltransferase 5 		ENSMUST00000116420 (Trmt5-201) 73280410-73286711 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SK_0001ENSDARG00000002077ENSDART00000006648ENSDARG00000069278ENSDART00000085989CIL_0006SK_0002ENSG00000126814ENST00000261249ENST00000553903ENST00000555420ENSG00000139974ENST00000267488ENST00000354886ENST00000451406ENST00000491344ENST00000524402ENST00000525585ENST00000525723ENST00000526105ENST00000526539ENST00000527591ENST00000528350ENST00000529212ENST00000529345ENST00000532148ENST00000533744ENST00000534758ENST00000554072ENST00000554304ENST00000554498ENST00000556938ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832CIL_0006SK_0003ENSMUSG00000021103ENSMUST00000021523ENSMUST00000187549ENSMUST00000189644ENSMUSG00000034442ENSMUST00000116420
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SK_0001ENSDARG00000002077ENSDART00000006648ENSDARG00000069278ENSDART00000085989CIL_0006SK_0002ENSG00000126814ENST00000261249ENSG00000139974ENST00000267488ENST00000354886ENST00000554304ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832CIL_0006SK_0003ENSMUSG00000021103ENSMUST00000021523ENSMUST00000187549ENSMUST00000189644ENSMUSG00000034442ENSMUST00000116420
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002077 ENSDART00000006648 N/A N/A N/A 2.952±1.61 N/A N/A 1.865±0.79 6.030±0.00 0.153±0.00 N/A 1.968±0.00 N/A N/A N/A
ENSDARG00000069278 ENSDART00000085989 N/A N/A N/A 1.996±0.46 N/A N/A 2.023±0.27 7.392±4.71 1.921±0.00 N/A 0.702±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126814 ENST00000261249 2.376±0.00 1.270±0.00 1.039±0.00 1.645±0.07 2.590±0.12 1.762±0.34 0.810±0.18 1.094±0.00 2.684±0.00 2.022±1.01 N/A 3.517±0.39 1.134±0.36 5.052±3.15
ENST00000553903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139974 ENST00000267488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.722±0.09 N/A
ENST00000354886 N/A N/A N/A N/A 3.681±0.00 N/A N/A N/A N/A 1.874±0.00 N/A N/A N/A N/A
ENST00000451406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554304 N/A N/A 10.913±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258445 ENST00000556153 N/A 0.251±0.00 0.345±0.00 0.160±0.08 0.555±0.00 0.570±0.00 0.108±0.06 0.157±0.06 1.154±0.00 0.384±0.00 0.099±0.00 0.205±0.16 N/A 0.168±0.00
ENSG00000258485 ENST00000553832 0.050±0.00 N/A N/A 0.097±0.06 0.410±0.00 0.745±0.00 0.207±0.03 0.069±0.00 0.140±0.00 0.791±0.00 0.574±0.00 0.519±0.47 N/A 0.093±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021103 ENSMUST00000021523 N/A 0.262±0.00 1.162±0.09 1.075±0.16 N/A N/A N/A N/A 0.821±0.28 N/A 1.330±0.14 2.107±0.60 1.904±1.16 1.899±0.00
ENSMUST00000187549 N/A 0.404±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189644 6.474±0.86 2.680±0.63 7.860±2.31 9.780±3.84 5.416±1.36 3.174±0.79 4.469±0.21 5.842±0.66 3.781±2.00 5.311±0.94 3.854±0.78 8.420±6.85 17.984±15.86 6.632±4.97
ENSMUSG00000034442 ENSMUST00000116420 4.494±1.23 2.801±0.91 5.916±0.90 5.919±1.42 3.897±1.16 2.064±0.24 9.182±1.64 2.494±0.72 4.021±2.63 2.823±0.59 1.912±0.44 4.990±1.51 9.241±3.94 5.715±2.13

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