C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008MW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1602 VISTA 9606 14:60353481-60955733
GeneTranscriptPositionBiotype
ENSG00000100625 (SIX4)
SIX homeobox 4 		ENST00000216513 (SIX4-001) 60709528-60724134 protein_coding
ENST00000554079 (SIX4-002) 60713167-60723165 processed_transcript
ENST00000556952 (SIX4-004) 60719802-60724348 protein_coding
ENSG00000126778 (SIX1)
SIX homeobox 1 		ENST00000247182 (SIX1-001) 60643415-60649462 protein_coding
ENST00000553535 (SIX1-002) 60645270-60653026 processed_transcript
ENST00000554986 (SIX1-005) 60644696-60658259 protein_coding
ENST00000555627 (SIX1-003) 60651775-60653079 retained_intron
ENST00000555955 (SIX1-004) 60644931-60653131 retained_intron
ENSG00000179008 (C14orf39)
chromosome 14 open reading frame 39 		ENST00000321731 (C14orf39-001) 60435956-60486096 protein_coding
ENST00000498565 (C14orf39-002) 60396469-60455050 nonsense_mediated_decay
ENST00000555476 (C14orf39-004) 60471632-60486044 protein_coding
ENST00000556799 (C14orf39-005) 60478357-60515543 protein_coding
ENST00000557138 (C14orf39-003) 60436623-60486019 nonsense_mediated_decay
ENSG00000184302 (SIX6)
SIX homeobox 6 		ENST00000327720 (SIX6-001) 60508951-60512850 protein_coding
ENSG00000241354 (RP11-1042B17.2)
 ENST00000489560 (RP11-1042B17.2-001) 60602146-60602533 processed_pseudogene
ENSG00000244756 (RP11-1042B17.1)
 ENST00000492636 (RP11-1042B17.1-001) 60572024-60572311 processed_pseudogene
ENSG00000258427 (RBM8B)
RNA binding motif protein 8B pseudogene 		ENST00000555532 (RBM8B-001) 60397757-60398281 processed_pseudogene
ENSG00000258445 (RP11-307P22.1)
 ENST00000556153 (RP11-307P22.1-001) 60779978-60780595 processed_pseudogene
ENSG00000258485 (SRMP2)
spermidine synthase pseudogene 2 		ENST00000553832 (SRMP2-001) 60919240-60920155 processed_pseudogene
ENSG00000258670 (RP11-1042B17.3)
 ENST00000557618 (RP11-1042B17.3-001) 60515119-60554916 antisense
ENSG00000258692 (SALL4P7)
spalt-like transcription factor 4 pseudogene 7 		ENST00000555779 (SALL4P7-001) 60493766-60496885 transcribed_processed_pseudogene
ENSG00000258764 (RP11-1042B17.4)
 ENST00000557593 (RP11-1042B17.4-001) 60544400-60544654 transcribed_processed_pseudogene
ENSG00000258952 (RP11-1042B17.5)
 ENST00000555871 (RP11-1042B17.5-001) 60640730-60642589 lincRNA
ENSG00000259169 (GNRHR2P1)
gonadotropin-releasing hormone (type 2) receptor 2 pseudogene 1 		ENST00000555315 (GNRHR2P1-001) 60398934-60400013 unprocessed_pseudogene
CIL_0008MW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1602 VISTA 10090 12:72750612-73352572
GeneTranscriptPositionBiotype
ENSMUSG00000021096 (Ppm1a)
protein phosphatase 1A, magnesium dependent, alpha isoform 		ENSMUST00000021514 (Ppm1a-201) 72761211-72794940 protein_coding
ENSMUSG00000021098 (4930447C04Rik)
RIKEN cDNA 4930447C04 gene 		ENSMUST00000044000 (4930447C04Rik-001) 72881109-72917906 protein_coding
ENSMUST00000110489 (4930447C04Rik-201) 72881109-72917760 protein_coding
ENSMUST00000130635 (4930447C04Rik-005) 72913187-72937977 protein_coding
ENSMUST00000131033 (4930447C04Rik-002) 72906234-72917857 nonsense_mediated_decay
ENSMUST00000132016 (4930447C04Rik-007) 72892924-72906271 processed_transcript
ENSMUST00000132067 (4930447C04Rik-003) 72913191-72940083 protein_coding
ENSMUST00000132901 (4930447C04Rik-008) 72892870-72906473 retained_intron
ENSMUST00000136075 (4930447C04Rik-004) 72911659-72940774 protein_coding
ENSMUST00000143960 (4930447C04Rik-006) 72892816-72906277 nonsense_mediated_decay
ENSMUSG00000021099 (Six6)
sine oculis-related homeobox 6 		ENSMUST00000021519 (Six6-001) 72939892-72944899 protein_coding
ENSMUSG00000021103 (Mnat1)
menage a trois 1 		ENSMUST00000021523 (Mnat1-001) 73123717-73273988 protein_coding
ENSMUST00000187549 (Mnat1-002) 73123717-73233548 protein_coding
ENSMUST00000189644 (Mnat1-003) 73123717-73272851 nonsense_mediated_decay
ENSMUSG00000034442 (Trmt5)
TRM5 tRNA methyltransferase 5 		ENSMUST00000116420 (Trmt5-201) 73280410-73286711 protein_coding
ENSMUSG00000034460 (Six4)
sine oculis-related homeobox 4 		ENSMUST00000043208 (Six4-001) 73099609-73113425 protein_coding
ENSMUST00000175693 (Six4-002) 73103441-73113456 protein_coding
ENSMUSG00000044712 (Slc38a6)
solute carrier family 38, member 6 		ENSMUST00000058139 (Slc38a6-002) 73286857-73327878 nonsense_mediated_decay
ENSMUST00000101313 (Slc38a6-004) 73287060-73312182 protein_coding
ENSMUST00000122920 (Slc38a6-006) 73286908-73319005 protein_coding
ENSMUST00000126488 (Slc38a6-003) 73286790-73319016 protein_coding
ENSMUST00000134247 (Slc38a6-007) 73318629-73339989 retained_intron
ENSMUST00000140523 (Slc38a6-001) 73286779-73354049 protein_coding
ENSMUST00000150996 (Slc38a6-008) 73344367-73351865 retained_intron
ENSMUST00000153941 (Slc38a6-005) 73286895-73314520 protein_coding
ENSMUSG00000051367 (Six1)
sine oculis-related homeobox 1 		ENSMUST00000050029 (Six1-001) 73041827-73047179 protein_coding
ENSMUST00000175677 (Six1-002) 73043774-73045291 processed_transcript
ENSMUST00000176091 (Six1-003) 73043531-73053887 processed_transcript
ENSMUST00000176310 (Six1-004) 73040015-73042815 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008MW_0001ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000126778ENST00000247182ENST00000553535ENST00000554986ENST00000555627ENST00000555955ENSG00000179008ENST00000321731ENST00000498565ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000241354ENST00000489560ENSG00000244756ENST00000492636ENSG00000258427ENST00000555532ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832ENSG00000258670ENST00000557618ENSG00000258692ENST00000555779ENSG00000258764ENST00000557593ENSG00000258952ENST00000555871ENSG00000259169ENST00000555315CIL_0008MW_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008MW_0001ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000126778ENST00000247182ENST00000553535ENST00000554986ENSG00000179008ENST00000321731ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000241354ENST00000489560ENSG00000244756ENST00000492636ENSG00000258427ENST00000555532ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832ENSG00000258670ENST00000557618ENSG00000258692ENST00000555779ENSG00000258764ENST00000557593ENSG00000258952ENST00000555871ENSG00000259169ENST00000555315CIL_0008MW_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100625 ENST00000216513 0.252±0.00 0.072±0.00 0.073±0.00 0.185±0.00 0.441±0.00 0.166±0.00 0.016±0.00 0.588±0.00 N/A 0.696±0.00 3.191±0.00 0.589±0.36 0.297±0.08 0.443±0.00
ENST00000554079 N/A N/A N/A 0.120±0.00 1.041±0.00 N/A N/A N/A 0.101±0.00 N/A 0.789±0.00 N/A N/A N/A
ENST00000556952 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.314±0.00 N/A
ENSG00000126778 ENST00000247182 0.685±0.00 N/A N/A 0.045±0.01 0.558±0.43 N/A N/A N/A 0.239±0.00 0.612±0.34 4.117±2.89 0.389±0.24 0.025±0.01 0.622±0.31
ENST00000553535 0.412±0.00 0.213±0.00 N/A 0.089±0.08 3.272±0.00 0.067±0.00 0.021±0.00 N/A N/A 1.619±0.00 6.749±5.43 0.363±0.32 0.022±0.02 1.201±0.00
ENST00000554986 1.292±0.00 0.060±0.00 N/A N/A 1.107±0.73 N/A 0.015±0.00 0.083±0.00 N/A 1.200±0.00 5.405±3.54 0.683±0.78 0.045±0.01 2.000±1.04
ENST00000555627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179008 ENST00000321731 N/A 0.023±0.00 N/A N/A 0.041±0.02 0.012±0.00 N/A N/A N/A N/A N/A 0.051±0.04 N/A 2.551±0.32
ENST00000498565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555476 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 0.019±0.00 N/A 7.635±0.00
ENST00000556799 N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A
ENST00000557138 0.048±0.00 N/A N/A 0.006±0.00 N/A 0.090±0.00 N/A N/A N/A N/A 0.238±0.09 N/A N/A N/A
ENSG00000184302 ENST00000327720 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A 0.061±0.00
ENSG00000241354 ENST00000489560 N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A 0.207±0.00 N/A N/A 0.784±0.71 N/A N/A
ENSG00000244756 ENST00000492636 0.410±0.00 0.873±0.00 N/A 0.259±0.00 0.439±0.00 0.235±0.00 0.229±0.00 0.188±0.00 0.166±0.00 0.539±0.00 0.275±0.00 0.525±0.40 N/A 0.167±0.00
ENSG00000258427 ENST00000555532 0.067±0.00 0.108±0.00 N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.083±0.01 N/A N/A N/A N/A
ENSG00000258445 ENST00000556153 N/A 0.251±0.00 0.345±0.00 0.160±0.08 0.555±0.00 0.570±0.00 0.108±0.06 0.157±0.06 1.154±0.00 0.384±0.00 0.099±0.00 0.205±0.16 N/A 0.168±0.00
ENSG00000258485 ENST00000553832 0.050±0.00 N/A N/A 0.097±0.06 0.410±0.00 0.745±0.00 0.207±0.03 0.069±0.00 0.140±0.00 0.791±0.00 0.574±0.00 0.519±0.47 N/A 0.093±0.00
ENSG00000258670 ENST00000557618 0.340±0.00 0.815±0.00 N/A 0.687±0.00 0.478±0.00 0.228±0.00 0.160±0.06 0.425±0.00 0.071±0.00 0.479±0.00 0.012±0.00 0.097±0.06 N/A 0.295±0.16
ENSG00000258692 ENST00000555779 N/A N/A N/A 0.014±0.00 0.057±0.00 N/A 0.007±0.00 N/A N/A N/A N/A 0.093±0.00 N/A 0.044±0.01
ENSG00000258764 ENST00000557593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00
ENSG00000258952 ENST00000555871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.574±0.00 0.094±0.00 N/A N/A
ENSG00000259169 ENST00000555315 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021096 ENSMUST00000021514 23.524±3.51 28.437±9.32 34.041±1.06 22.961±3.87 20.577±5.74 21.229±0.66 15.761±7.02 16.750±3.83 19.247±2.00 16.477±1.59 30.146±13.07 15.843±5.82 19.698±4.83 56.192±11.05
ENSMUSG00000021098 ENSMUST00000044000 N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.03 N/A N/A N/A 0.036±0.00 0.805±0.00
ENSMUST00000110489 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.038±0.01 0.049±0.00 N/A N/A
ENSMUST00000130635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131033 0.090±0.00 N/A N/A 0.865±0.21 0.165±0.12 N/A 0.023±0.00 0.040±0.00 0.244±0.08 N/A 0.034±0.02 0.112±0.01 0.499±0.48 0.797±0.11
ENSMUST00000132016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENSMUST00000132067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132901 N/A 1.458±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A 0.048±0.02 N/A N/A 2.535±0.00
ENSMUST00000136075 0.067±0.00 N/A N/A 0.607±0.01 0.054±0.02 N/A 0.016±0.00 0.024±0.00 0.147±0.06 N/A N/A 0.036±0.00 0.084±0.00 N/A
ENSMUST00000143960 N/A N/A N/A 2.369±0.00 N/A N/A 0.115±0.00 N/A N/A N/A 0.102±0.04 0.239±0.01 0.620±0.40 N/A
ENSMUSG00000021099 ENSMUST00000021519 N/A N/A N/A 0.384±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021103 ENSMUST00000021523 N/A 0.262±0.00 1.162±0.09 1.075±0.16 N/A N/A N/A N/A 0.821±0.28 N/A 1.330±0.14 2.107±0.60 1.904±1.16 1.899±0.00
ENSMUST00000187549 N/A 0.404±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189644 6.474±0.86 2.680±0.63 7.860±2.31 9.780±3.84 5.416±1.36 3.174±0.79 4.469±0.21 5.842±0.66 3.781±2.00 5.311±0.94 3.854±0.78 8.420±6.85 17.984±15.86 6.632±4.97
ENSMUSG00000034442 ENSMUST00000116420 4.494±1.23 2.801±0.91 5.916±0.90 5.919±1.42 3.897±1.16 2.064±0.24 9.182±1.64 2.494±0.72 4.021±2.63 2.823±0.59 1.912±0.44 4.990±1.51 9.241±3.94 5.715±2.13
ENSMUSG00000034460 ENSMUST00000043208 0.344±0.22 0.143±0.05 0.379±0.01 0.073±0.00 N/A 0.118±0.04 0.323±0.00 0.248±0.20 0.010±0.00 0.514±0.23 0.596±0.19 0.842±0.05 0.092±0.08 0.029±0.00
ENSMUST00000175693 0.106±0.07 0.103±0.04 N/A 0.044±0.02 0.168±0.00 0.079±0.04 N/A 0.072±0.00 0.007±0.00 0.265±0.04 N/A 0.420±0.19 0.023±0.01 0.031±0.01
ENSMUSG00000044712 ENSMUST00000058139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.552±0.00 N/A 4.130±0.31
ENSMUST00000101313 N/A N/A N/A 10.114±0.00 N/A N/A N/A N/A N/A N/A N/A 7.409±0.00 44.940±3.53 N/A
ENSMUST00000122920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126488 N/A 4.779±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140523 4.405±0.52 1.441±0.12 4.419±0.02 1.233±0.00 3.519±0.57 N/A 1.537±0.07 3.200±0.22 1.671±0.27 3.833±0.29 N/A 2.683±1.05 N/A 2.647±0.94
ENSMUST00000150996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153941 13.224±2.05 6.051±0.68 6.005±1.94 20.923±22.87 12.982±3.03 18.290±7.36 7.567±2.24 9.324±1.68 10.546±6.61 14.945±1.60 8.994±4.55 10.417±6.74 57.874±46.18 6.220±2.74
ENSMUSG00000051367 ENSMUST00000050029 2.302±1.44 0.984±0.44 0.521±0.00 0.120±0.08 1.790±0.75 0.016±0.00 0.222±0.07 0.210±0.04 0.050±0.07 1.455±0.17 15.376±2.72 0.287±0.21 0.042±0.04 0.321±0.14
ENSMUST00000175677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.05 0.166±0.06 N/A
ENSMUST00000176310 N/A N/A N/A N/A 1.163±0.00 N/A N/A N/A 0.021±0.00 N/A 12.382±0.00 N/A N/A N/A

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