C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261249 TRMT5-001 ENSG00000126814 9606 - 14:60971451-60981358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000261249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000261249 2.376±0.00 1.270±0.00 1.039±0.00 1.645±0.07 2.590±0.12 1.762±0.34 0.810±0.18 1.094±0.00 2.684±0.00 2.022±1.01 3.517±0.39 1.134±0.36 5.052±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SK CIL_0006SK_0002 CGP 14:60734742-60981358
CIL_00035S CIL_00035S_0002 CGP 14:60971451-61083733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005759 IEA mitochondrial matrix
GO:0030488 IEA tRNA methylation
GO:0052906 IEA tRNA (guanine(37)-N(1))-methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116420 Trmt5-201 protein_coding Mus_musculus 0 1282
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 497
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 477
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 411
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 329
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 329
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 324
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 292
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 285
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 285
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 254
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 252
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 252
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 252
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 252
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 248
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 244
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 217
ENSMUST00000121255 Gm6985-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 2.8026e-45 189
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 3.9937e-43 182
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 1e-33 150
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 2e-31 143
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 2e-31 143

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