C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytohesin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116456 Cyth3-001 ENSMUSG00000018001 10090 + 5:143622447-143710250 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116456 7.412±4.27 64.119±4.68 18.273±0.03 9.211±3.11 10.660±6.35 9.940±3.21 10.381±2.44 4.939±3.06 9.312±9.48 89.497±3.61 2.477±0.78 17.622±9.48 18.712±3.27 3.217±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RJ CIL_0006RJ_0002 CGP 5:143622447-143732280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IPI ruffle
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005086 IBA:ISS ARF guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005547 IDA phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005886 IDA plasma membrane
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045785 IDA positive regulation of cell adhesion
GO:0048193 ISS Golgi vesicle transport
GO:0090162 IMP establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028022 cyth4b-201 protein_coding Danio_rerio 0 425
ENST00000350796 CYTH3-001 protein_coding Homo_sapiens 0 1482
ENST00000391881 CYTH2-004 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000396741 CYTH3-201 protein_coding Homo_sapiens 0 1474
ENST00000452733 CYTH2-001 protein_coding Homo_sapiens 0 837
ENST00000482460 CYTH3-002 processed_transcript Homo_sapiens 0 207
ENST00000493260 CYTH2-002 retained_intron Homo_sapiens 0 339
ENST00000495176 CYTH3-004 retained_intron Homo_sapiens 0 300

Loading